Publications by authors named "J E Blackmer"

Community isolation of patients with communicable infectious diseases limits spread of pathogens but our understanding of isolated patients' needs and challenges is incomplete. Rwanda deployed a digital health service nationally to assist public health clinicians to remotely monitor and support SARS-CoV-2 cases via their mobile phones using daily interactive short message service (SMS) check-ins. We aimed to assess the texting patterns and communicated topics to better understand patient experiences.

View Article and Find Full Text PDF

Objectives: Implementing a predictive analytic model in a new clinical environment is fraught with challenges. Dataset shifts such as differences in clinical practice, new data acquisition devices, or changes in the electronic health record (EHR) implementation mean that the input data seen by a model can differ significantly from the data it was trained on. Validating models at multiple institutions is therefore critical.

View Article and Find Full Text PDF
Article Synopsis
  • HIV-1 creates a long-lasting reservoir of infected cells that can't be fully eradicated by antiretroviral therapy (ART), leading to a unique profile in those on long-term treatment.
  • Research found that long-term ART-treated individuals had intact proviruses mainly located in heterochromatin regions, especially near centromeres, suggesting a selection process that favors these positions for viral persistence.
  • This preferential integration in repressive chromatin may result in a reservoir that is less likely to cause viral rebound if ART is interrupted, indicating a potential mechanism of deep latency in HIV-1.
View Article and Find Full Text PDF

Progressive resistance training (PRT), which involves performing muscle contractions against progressively greater external loads, can increase muscle mass and strength in healthy individuals and in patient populations. There is a need for precision rehabilitation tools to test the safety and effectiveness of PRT to maintain and/or restore muscle mass and strength in preclinical studies on small and large animal models. The PRT methodology and device described in this article can be used to perform dosage-adjusted resistance training (DART).

View Article and Find Full Text PDF

HIV-1-infected cells that persist despite antiretroviral therapy (ART) are frequently considered "transcriptionally silent," but active viral gene expression may occur in some cells, challenging the concept of viral latency. Applying an assay for profiling the transcriptional activity and the chromosomal locations of individual proviruses, we describe a global genomic and epigenetic map of transcriptionally active and silent proviral species and evaluate their longitudinal evolution in persons receiving suppressive ART. Using genome-wide epigenetic reference data, we show that proviral transcriptional activity is associated with activating epigenetic chromatin features in linear proximity of integration sites and in their inter- and intrachromosomal contact regions.

View Article and Find Full Text PDF