Publications by authors named "J Die"
refseqR: an R package for common computational operations with records on RefSeq collection.
Bioinform Adv
August 2024
Summary: We introduce refseqR, an R package that offers a user-friendly solution, enabling common computational operations on RefSeq entries (GenBank, NCBI). The package is specifically designed to interact with records curated from the RefSeq database. Most importantly, the interoperability and integration with several Bioconductor objects allow connections to be applied to other projects.
View Article and Find Full Text PDFBackground: Cicer arietinum is a significant legume crop cultivated mainly in short-season environments, where early-flowering is a desirable trait to overcome terminal constraints. Despite its agricultural significance, the genetic control of flowering time in chickpea is not fully understood. In this study, we developed, phenotyped, re-sequenced and genetically characterized a pair of near-isogenic lines (NILs) with contrasting days to flowering to identify candidate gene variants potentially associated with flowering time.
View Article and Find Full Text PDFFusarium wilt is one of the most destructive chickpea diseases worldwide. Race 5 (Foc5) is the most harmful in the Mediterranean basin. The primary objective of this study is to validate a block of six SNP markers previously mapped in Ca2 in a diverse panel of cultivars, advanced and inbred lines phenotyped for resistance to fusarium wilt.
View Article and Find Full Text PDFObjective: This study aimed to investigate the influence of sarcopenic obesity on anastomotic leak following elective colon resection for non-metastatic colon cancer. Secondary outcomes included overall morbidity, mortality and length of hospital stay.
Methods: This retrospective observational study, conducted at a colorectal surgery referral centre, spanned from January 1, 2015, to January 1, 2020.