Publications by authors named "J Chiquet"

Cardiometabolic health is complex and characterized by an ensemble of correlated and/or co-occurring conditions including obesity, dyslipidemia, hypertension, and diabetes mellitus. It is affected by social, lifestyle, and environmental factors, which in-turn exhibit complex correlation patterns. To account for the complexity of (i) exposure profiles and (ii) health outcomes, we propose to use a multitrait Bayesian variable selection approach and identify a sparse set of exposures jointly explanatory of the complex cardiometabolic health status.

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Stability selection represents an attractive approach to identify sparse sets of features jointly associated with an outcome in high-dimensional contexts. We introduce an automated calibration procedure via maximisation of an in-house stability score and accommodating a priori-known block structure (e.g.

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Article Synopsis
  • * Simulation results indicate that clustering approaches calibrated with the sharp score and those that utilize weighted attributes outperform traditional methods and unweighted approaches, especially when non-contributing features are present.
  • * The findings are further validated through an application on gene expression data in lung tissue, which successfully identifies distinct clusters associated with various lung cancer subtypes.
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Plant defense responses involve several biological processes that allow plants to fight against pathogenic attacks. How these different processes are orchestrated within organs and depend on specific cell types is poorly known. Here, using single-cell RNA sequencing (scRNA-seq) technology on three independent biological replicates, we identified several cell populations representing the core transcriptional responses of wild-type Arabidopsis leaves inoculated with the bacterial pathogen Pseudomonas syringae DC3000.

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  • Various methods, including multivariate penalized regression and interval mapping, were tested for predicting traits related to drought in grapevines, with penalized regression proving more effective for QTL detection.
  • The study revealed new QTLs linked to drought tolerance using a dense genetic mapping approach, demonstrating the potential of genomic prediction to enhance grapevine breeding efforts.
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