Publications by authors named "J A Van Der Knaap"

Article Synopsis
  • Dredging is performed to maintain waterways and improve water quality, but recent studies highlight its role in reducing aquatic greenhouse gas emissions, without addressing emissions from the dredged sludge itself.
  • The study conducted in the Netherlands measured GHG emissions, such as carbon dioxide and methane, from a sludge depot, finding that drying sludge increases emissions, while permanent inundation significantly reduces them.
  • Adding zeolite to sludge helped lower nitrous oxide emissions but didn't impact total GHG emissions; further research is needed on different types of sludge to better understand their environmental effects.
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Ubiquitin-specific protease 7 (USP7) has been implicated in cancer progression and neurodevelopment. However, its molecular targets remain poorly characterized. We combined quantitative proteomics, transcriptomics, and epigenomics to define the core USP7 network.

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ATP-dependent chromatin remodelers control the accessibility of genomic DNA through nucleosome mobilization. However, the dynamics of genome exploration by remodelers, and the role of ATP hydrolysis in this process remain unclear. We used live-cell imaging of polytene nuclei to monitor Brahma (BRM) remodeler interactions with its chromosomal targets.

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To make the appropriate developmental decisions or maintain homeostasis, cells and organisms must coordinate the expression of their genome and metabolic state. However, the molecular mechanisms that relay environmental cues such as nutrient availability to the appropriate gene expression response remain poorly understood. There is a growing awareness that central components of intermediary metabolism are cofactors or cosubstrates of chromatin-modifying enzymes.

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Nucleotide biosynthesis is fundamental to normal cell proliferation as well as to oncogenesis. Tumor suppressor p53, which prevents aberrant cell proliferation, is destabilized through ubiquitylation by MDM2. Ubiquitin-specific protease 7 (USP7) plays a dualistic role in p53 regulation and has been proposed to deubiquitylate either p53 or MDM2.

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