Publications by authors named "Ivan V Sergeyev"

Article Synopsis
  • * The study introduces a new method using multinuclear solid-state magic-angle-spinning nuclear magnetic resonance (MAS NMR) spectroscopy enhanced by dynamic nuclear polarization (DNP) to analyze the spatial arrangement of LNP components, specifically in siRNA-based drugs.
  • * Results reveal a structural model where siRNA resides in the core, targeting agents are positioned beneath the surface, and sugars are located above the lipid layer, highlighting the potential of this approach for broader applications in analyzing complex biological formulations.
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NMR at cryogenic temperatures has the potential to provide rich site-specific details regarding biopolymer structure, function, and mechanistic intermediates. Broad spectral lines compared with room temperature NMR can sometimes present practical challenges. A number of hypotheses regarding the origins of line broadening are explored.

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Solid-state dynamic nuclear polarization enhanced magic angle spinning (DNP-MAS) NMR measurements coupled with density functional theory (DFT) calculations enable the full resonance assignment of a complex pharmaceutical drug molecule without the need for isotopic enrichment. DNP dramatically enhances the NMR signals, thereby making possible previously intractable two-dimensional correlation NMR spectra at natural abundance. Using inputs from DFT calculations, herein we describe a significant improvement to the structure elucidation process for complex organic molecules.

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  • Fluorinated drugs are increasingly popular in the pharmaceutical market, and this study focuses on using advanced F magic-angle spinning nuclear magnetic resonance (NMR) spectroscopy to analyze them.
  • The technique allows for quick observation of fluorine signals with high-quality spectra obtained in just minutes, enabling efficient structural characterization of drugs like Celebrex, Cipro, and others.
  • The study highlights how certain spectral features are sensitive to the type of fluorine present and the drug formulation, suggesting this method could greatly enhance the rapid analysis of fluorine-containing pharmaceuticals.
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Article Synopsis
  • - The paper explores the expanding field of dynamic nuclear polarization-enhanced magic angle spinning (DNP MAS) NMR, which significantly boosts signal strength for studying biological systems, especially under challenging conditions.
  • - It highlights the trade-off between increased signal strength and reduced spectral resolution when using DNP, presenting a detailed analysis of C-detected NMR experiments on HIV-1 CA tubular assemblies.
  • - Key factors affecting signal enhancement and resolution, such as biradical concentration, polarization transfer pathways, and enhancement buildup time, are identified, offering practical insights for optimizing experimental setups in DNP NMR studies.
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Article Synopsis
  • * A new fast MAS F NMR technique allows for better structural characterization of fluorine-containing drugs, with mefloquine serving as a case study.
  • * The study explores advanced methods for frequency assignment and interfluorine distance measurements, enhancing the understanding of molecular structures and interactions in solid pharmaceuticals.
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Polyphosphates (polyPs) are ubiquitous polymers in living organisms from bacteria to mammals. They serve a wide variety of biological functions, ranging from energy storage to stress response. In the last two decades, polyPs have been primarily viewed as linear polymers with varying chain lengths.

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Performance decline in Li-excess cathodes is generally attributed to structural degradation at the electrode-electrolyte interphase, including transition metal migration into the lithium layer and oxygen evolution into the electrolyte. Reactions between these new surface structures and/or reactive oxygen species in the electrolyte can lead to the formation of a cathode electrolyte interphase (CEI) on the surface of the electrode, though the link between CEI composition and the performance of Li-excess materials is not well understood. To bridge this gap in understanding, we use solid-state nuclear magnetic resonance (SSNMR) spectroscopy, dynamic nuclear polarization (DNP) NMR, and electrochemical impedance spectroscopy (EIS) to assess the chemical composition and impedance of the CEI on LiRuO as a function of state of charge and cycle number.

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While lithium metal represents the ultimate high-energy-density battery anode material, its use is limited by dendrite formation and associated safety risks, motivating studies of the solid-electrolyte interphase layer that forms on the lithium, which is key in controlling lithium metal deposition. Dynamic nuclear polarisation enhanced NMR can provide important structural information; however, typical exogenous dynamic nuclear polarisation experiments, in which organic radicals are added to the sample, require cryogenic sample cooling and are not selective for the interface between the metal and the solid-electrolyte interphase. Here we instead exploit the conduction electrons of lithium metal to achieve an order of magnitude hyperpolarisation at room temperature.

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Dynamic Nuclear Polarization (DNP) has recently emerged as a key method to increase the sensitivity of solid-state NMR spectroscopy under Magic Angle Spinning (MAS). While efficient binitroxide polarizing agents such as AMUPol have been developed for MAS DNP NMR at magnetic fields up to 9.4 T, their performance drops rapidly at higher fields due to the unfavorable field dependence of the cross-effect (CE) mechanism and AMUPol-like radicals were so far disregarded in the context of the development of polarizing agents for very high-field DNP.

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Article Synopsis
  • Researchers have developed a new HCN CPMAS probe that increases sensitivity in MAS NMR experiments by 3-4 times, allowing for better analysis of complex biological systems.
  • This probe operates with its sample coil and electronics at cryogenic temperatures while maintaining the sample at normal temperatures, which enhances data collection for 2D and 3D experiments.
  • The technology has shown promising results with difficult samples, such as protein assemblies and prion fibrils, suggesting it could greatly benefit studies involving low-sensitivity biological systems.
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Article Synopsis
  • - Long-range interatomic distance restraints are vital for determining molecular structures via NMR spectroscopy, particularly using fluorine due to its great magnetic properties and versatile usage in biological and synthetic molecules.
  • - The study presents a method for accurately measuring interfluorine distances in multispin systems using finite pulse radio frequency driven recoupling (fpRFDR) at high magic-angle spinning (MAS) frequencies (40-60 kHz).
  • - It discusses optimal conditions for these distance measurements, including experimental technique choices and simulation protocols, which can enhance NMR structure determination even without crystal structures.
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A novel Dynamic Nuclear Polarization (DNP) NMR polarizing agent ToSMTSL-PTE representing a phospholipid with a biradical TOTAPOL tethered to the polar head group has been synthesized, characterized, and employed to enhance solid-state Nuclear Magnetic Resonance (SSNMR) signal of a lipid-reconstituted integral membrane protein proteorhodopsin (PR). A matrix-free PR formulation for DNP improved the absolute sensitivity of NMR signal by a factor of ca. 4 compared to a conventional preparation with TOTAPOL dispersed in a glassy glycerol/water matrix.

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Silicon nanoparticles (SiNPs) are intriguing materials and their properties fascinate the broader scientific community; they are also attractive to the biological and materials science sub-disciplines because of their established biological and environmental compatibility, as well as their far-reaching practical applications. While characterization of the particle nanostructure can be performed using Si solid-state nuclear magnetic resonance (NMR) spectroscopy, poor sensitivity due to low Boltzmann population and long acquisition times hinder in-depth studies of these potentially game-changing materials. In this study, we compare two dynamic nuclear polarization (DNP) NMR protocols to boost Si sensitivity in hydride-terminated SiNPs.

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The development of new, high-frequency solid-state diode sources capable of operating at 263 GHz, together with an optimized stator design for improved millimeter-wave coupling to the NMR sample, have enabled low-power DNP experiments at 263 GHz/400 MHz. With 250 mW output power, signal enhancements as high as 120 are achieved on standard samples - approximately 1/3 of the maximal enhancement available with high-power gyrotrons under similar conditions. Diode-based sources have a number of advantages over vacuum tube devices: they emit a pure mode, can be rapidly frequency-swept over a wide range of frequencies, have reproducible output power over this range, and have excellent output stability.

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Article Synopsis
  • Researchers demonstrated up to 100-fold signal enhancements in fluorine (F) dynamic nuclear polarization (DNP) magic angle spinning (MAS) NMR spectra of HIV-1 capsid protein assemblies at 14.1 T, achieving notable sensitivity ratios of 12-29.
  • They successfully recorded 2D F-C HETCOR spectra at MAS frequencies above 20 kHz, revealing valuable long-range intra- and intermolecular correlations for protein structure determination.
  • The study highlights the effectiveness of DNP-enhanced F MAS NMR spectroscopy for characterizing large biomolecular systems, with systematic analysis of various factors affecting the DNP enhancements.
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A series of dibenzo-7-phosphanorbornadiene compounds, PhPC(R)PA (1-R; A = CH, anthracene; R = Me, Et, Pr, Bu), are reported to be capable of thermal fragmentation to generate alkyl-substituted phosphaalkynes (RC≡P) concomitant with triphenylphosphine and anthracene. Facile preparation of these molecular precursors proceeds by treatment of ClPA with the appropriate ylide PhP═CHR (2 equiv). For methyl, ethyl, and isopropyl substituents, the phosphaalkyne conversions are measured to be 56-73% in solution by quantitative P NMR spectroscopy.

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We present a general strategy for determining the cholesterol-binding site of eukaryotic membrane proteins in native-like lipid membranes by NMR spectroscopy. The strategy combines yeast biosynthetic C enrichment of cholesterol with detection of protein-cholesterol C-C cross peaks in 2D correlation NMR spectra under the dynamic nuclear polarization (DNP) condition. Low-temperature DNP not only allows high-sensitivity detection of weak protein-cholesterol cross peaks in 2D spectra but also immobilizes cholesterol and protein to enable intermolecular distance measurements.

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Rapid progress has been witnessed in the past decade in the fields of covalent organic frameworks (COFs) and dynamic nuclear polarization (DNP). In this contribution, we bridge these two fields by constructing radical-embedded COFs as promising DNP agents. Via polarization transfer from unpaired electrons to nuclei, DNP realizes significant enhancement of NMR signal intensities.

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The F chemical shift is a sensitive NMR probe of structure and electronic environment in organic and biological molecules. In this report, we examine chemical shift parameters of 4F-, 5F-, 6F-, and 7F-substituted crystalline tryptophan by magic angle spinning (MAS) solid-state NMR spectroscopy and density functional theory. Significant narrowing of the F lines was observed under fast MAS conditions, at spinning frequencies above 50 kHz.

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Metal-free polymeric carbon nitrides (PCNs) are promising photocatalysts for solar hydrogen production, but their structure-photoactivity relationship remains elusive. Two PCNs were characterized by dynamic-nuclear-polarization-enhanced solid-state NMR spectroscopy, which circumvented the need for specific labeling with either C- or N-enriched precursors. Rapid 1D and 2D data acquisition was possible, providing insights into the structural contrasts between the PCNs.

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The influenza M2 protein not only forms a proton channel but also mediates membrane scission in a cholesterol-dependent manner to cause virus budding and release. The atomic interaction of cholesterol with M2, as with most eukaryotic membrane proteins, has long been elusive. We have now determined the cholesterol-binding site of the M2 protein in phospholipid bilayers using solid-state NMR spectroscopy.

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Solid-state NMR (SSNMR) is a powerful tool for the elucidation of structure and dynamics in biological macromolecules. Over the years, SSNMR spectroscopists have developed an array of techniques enabling the measurement of internuclear correlations, distances, and torsional angles; these have been applied to the study of a number of biological systems that are difficult to study by X-ray crystallography and solution NMR, including key biological targets such as membrane proteins and amyloid fibrils. Applications of SSNMR to other topic areas, including materials science, pharmaceuticals, and small molecules, have also flourished in recent years.

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We characterize the effect of specifically bound biradicals on the NMR spectra of dihydrofolate reductase from E. coli. Dynamic nuclear polarization methods enhance the signal-to-noise of solid state NMR experiments by transferring polarization from unpaired electrons of biradicals to nuclei.

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A principal advantage of magic angle spinning (MAS) NMR spectroscopy lies in its ability to determine molecular structure in a noninvasive and quantitative manner. Accordingly, MAS should be widely applicable to studies of the structure of active pharmaceutical ingredients (API) and formulations. However, the low sensitivity encountered in spectroscopy of natural abundance APIs present at low concentration has limited the success of MAS experiments.

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