Publications by authors named "Ioanna H Antonopoulos"

Purpose: Reversible self-association (RSA) has long been a concern in therapeutic monoclonal antibody (mAb) development. Because RSA typically occurs at high mAb concentrations, accurate assessment of the underlying interaction parameters requires explicitly addressing hydrodynamic and thermodynamic nonideality. We previously examined the thermodynamics of RSA for two mAbs, C and E, in phosphate buffered saline (PBS).

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Transcription elongation requires the continuous incorporation of ribonucleotide triphosphates into a growing transcript. RNA polymerases (RNAPs) are able to processively synthesize a growing RNA chain via translocation of the RNAP enzyme along its nucleic acid template strand after each nucleotide addition cycle. In this work, a time-resolved Raman spectroscopic analysis of nucleotide addition in single crystals of the Thermus thermophilus elongation complex (TthEC) is reported.

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Article Synopsis
  • - The study investigates the stability and processive mechanism of the bacterial RNA polymerase elongation complex (EC) by using time-resolved Raman spectroscopy and polyacrylamide gel electrophoresis (PAGE) to track nucleotide addition in single crystals of TthEC RNAP.
  • - When the correct nucleotide GTP (*GTP) is introduced, Raman spectral changes indicate incorporation into RNA, with PAGE confirming near-complete conversion of the nascent RNA, while a second, non-covalently bound *GTP population is also identified.
  • - In contrast, the non-cognate nucleotide UTP (*UTP) shows only partial incorporation, leading to significant spectroscopic changes and suggesting that misincorporation affects the structure of
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