Publications by authors named "Inman J"

Introduction: Septal trauma is caused by compressive forces. Defining regional variability in compressive strength (CS) may reveal areas of weakness in the septum that are more prone to fracture. The objective of this study is to determine the CS at multiple locations within the cartilaginous septum and assess if variations in strength correlate with known patterns of septal fracture.

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Purpose: Alcohol use has been shown to affect injury patterns and risk of trauma. This study aims to characterize the epidemiologic characteristics of alcohol involved facial injuries presenting to US emergency departments.

Methods: This study reports a cross-sectional analysis of patients with facial injuries within the National Electronic Injury Surveillance System (NEISS).

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For single-molecule studies requiring surface anchoring of biomolecules, poorly passivated surfaces can result in alterations of biomolecule structure and function that lead to artifacts. Here, we present a surface passivation assay for single-molecule studies of chromatin and topoisomerase II. We detail steps for preparing a nucleosome array and hydrophobic nitrocellulose-coated flow cell.

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The angular optical trap (AOT) is a powerful technique for measuring the DNA topology and rotational mechanics of fundamental biological processes. Realizing the full potential of the AOT requires rapid torsional control of these processes. However, existing AOT quartz cylinders are limited in their ability to meet the high rotation rate requirement while minimizing laser-induced photodamage.

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Study Design: Retrospective database review.

Objective: This study aims to characterize and compare the epidemiological factors of orbital trauma between life stages by utilizing the National Electronic Injury Surveillance System (NEISS), a nationally representative database.

Methods: The NEISS was queried for orbital injuries from 2013 to 2022.

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Transcription through chromatin under torsion represents a fundamental problem in biology. Pol II must overcome nucleosome obstacles and, because of the DNA helical structure, must also rotate relative to the DNA, generating torsional stress. However, there is a limited understanding of how Pol II transcribes through nucleosomes while supercoiling DNA.

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Topoisomerase II (topo II) enzymes are essential enzymes known to resolve topological entanglements during DNA processing. Curiously, while yeast expresses a single topo II, humans express two topo II isozymes, topo IIα and topo IIβ, which share a similar catalytic domain but differ in their intrinsically disordered C-terminal domains (CTDs). During mitosis, topo IIα and condensin I constitute the most abundant chromosome scaffolding proteins essential for chromosome condensation.

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The inherent helical structure of DNA dictates that a replisome must rotate relative to DNA during replication, presenting inevitable topological challenges to replication. However, little is known about how the replisome progresses against torsional stress. Here, we developed a label-free, high-resolution, real-time assay to monitor replisome movement under torsion.

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Circular DNA found in the cell is actively regulated to an underwound state, with their superhelical density close to . While this underwound state is essential to life, how it impacts the torsional mechanical properties of DNA is not fully understood. In this work, we performed simulations to understand the torsional mechanics of circular DNA and validated our results with single-molecule measurements and analytical theory.

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Article Synopsis
  • DNA replication and transcription happen at the same time on the same DNA, which can create conflicts between the replisome and RNA polymerase, potentially causing genome instability.
  • Research shows that collisions between RNA polymerase and the replication fork are more harmful when they come from opposite directions (head-on) compared to when they run in the same direction (co-directional), but the exact reasons behind this aren't fully understood.
  • The study found that RNA polymerase binds more stably in head-on conflicts, especially with longer RNA transcripts, which enhances its ability to block replication; an RNA-DNA hybrid forms during this process, creating additional complications for the replication fork but could also help initiate replication on the lagging strand.
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Replication of DNA requires the parental DNA to be unwound to allow the genetic information to be faithfully duplicated by the replisome. While this function is usually shared by a host of proteins in the replisome, notably DNA polymerase (DNAP) and helicase, the consequence of DNAP synthesizing DNA while decoupled from helicase remains not well understood. The unwinding of downstream DNA poses significant stress to DNAP, and the interaction between DNAP and the replication fork may affect replication restart.

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Unlabelled: For complete details on the use and execution of this protocol, please refer to Le et al. (2019).

Summary: A.

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The angular optical trap (AOT) is a powerful technique for measuring the DNA topology and rotational mechanics of fundamental biological processes. Realizing the full potential of the AOT requires rapid torsional control of these processes. However, existing AOT quartz cylinders are limited in their ability to meet the high rotation rate requirement while minimizing laser-induced photodamage.

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The pollution of indoor environments and the consequent health risks associated with thirdhand smoke (THS) are increasingly recognized in recent years. However, the carcinogenic potential of THS and its underlying mechanisms have yet to be thoroughly explored. In this study, we examined the effects of short-term THS exposure on the development of gastric cancer (GC) in vitro and in vivo.

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Objective: To assess differences in obstructive sleep apnea (OSA)-related health parameters between residents of low income/low access (LILA) census tracts-food deserts-and non-LILA residents STUDY DESIGN: Retrospective review.

Setting: Single institution serving a large region in Southern California from 2017 to 2023.

Methods: Census tracts are defined as LILA if a significant proportion of residents live below the poverty threshold and far from healthy food vendors.

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Objectives: Recurrence and survival in early T-stage oral tongue squamous cell carcinoma (OTSCC) may be impacted by histopathologic risk factors. This study aims to examine which of these factors predict long-term outcomes of T1 and T2 OTSCC.

Methods: A retrospective review of T1 and T2 OTSCC patients treated with surgery at a single tertiary care center was conducted.

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Background: A better understanding of ductal carcinoma in situ (DCIS) is urgently needed to identify these preinvasive lesions as distinct clinical entities. Semaphorin 3F (SEMA3F) is a soluble axonal guidance molecule, and its coreceptors Neuropilin 1 (NRP1) and NRP2 are strongly expressed in invasive epithelial BC cells.

Methods: We utilized two cell line models to represent the progression from a healthy state to the mild-aggressive or ductal carcinoma in situ (DCIS) stage and, ultimately, to invasive cell lines.

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Objective: To determine the prevalence of occult contralateral nodal metastasis in tonsillar squamous cell carcinoma (TSCC) in patients who have undergone bilateral neck dissection.

Data Source: A systematic review of English articles identified from PubMed, Embase, and Web of Science databases.

Review Methods: Search terms included "oropharynx," "carcinoma," "lymph node," and "neck dissection.

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Background: Deeper insights into ERBB2-driven cancers are essential to develop new treatment approaches for ERBB2+ breast cancers (BCs). We employed the Collaborative Cross (CC) mouse model to unearth genetic factors underpinning Erbb2-driven mammary tumour development and metastasis.

Methods: 732 F1 hybrid female mice between FVB/N MMTV-Erbb2 and 30 CC strains were monitored for mammary tumour phenotypes.

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Article Synopsis
  • The study aimed to examine how the shape of the genial tubercle varies and to measure its relationship with the genioglossus muscle using cadaver dissection techniques.
  • Researchers analyzed 18 fresh cadaver heads, taking detailed 3D scans before and after muscle removal to obtain accurate measurements of the muscle attachments.
  • Findings showed that the genial tubercle has variable morphology, with muscle attachment predominantly above the tubercle's peak, which may contribute to a high failure rate (39-78%) in surgical procedures intended to advance the genioglossus muscle.
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Article Synopsis
  • The hypothalamus plays a critical role in maintaining homeostasis and is central to energy, glucose regulation, and reproduction through its arcuate nucleus (ARC).
  • Researchers developed a robotic cell culture platform to convert human pluripotent stem cells into specific neuronal types with ARC-like characteristics, showing potential for studying metabolic disorders.
  • This new model demonstrates responsiveness to hormones and neuropeptides, indicating its usefulness for disease research and understanding the dynamic regulation of related pathways, such as those involved in obesity and type 2 diabetes.
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Objective: To determine the effect of smoking history on the risk of developing obstructive eustachian tube dysfunction (OETD).

Study Design: Cross-sectional review.

Setting: National database.

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The angular optical trap (AOT) is a powerful instrument for measuring the torsional and rotational properties of a biological molecule. Thus far, AOT studies of DNA torsional mechanics have been carried out using a high numerical aperture oil-immersion objective, which permits strong trapping but inevitably introduces spherical aberrations due to the glass-aqueous interface. However, the impact of these aberrations on torque measurements is not fully understood experimentally, partly due to a lack of theoretical guidance.

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Objective: To evaluate patients' satisfaction with opioid versus opioid-sparing postoperative analgesia in patients undergoing outpatient head and neck surgery.

Study Design: Prospective randomized trial.

Setting: Tertiary care academic hospital.

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