Publications by authors named "Hye S Song"

Two novel bacterial strains, 273M-4 and Sam97, were isolated from seawater in the Yellow Sea, Muan-gun, South Korea, and identified as members of the genus Thalassotalea. Both strains were Gram-stain-negative, aerobic, rod-shaped, non-motile, non-flagellated, and oxidase- and catalase-positive. Phylogenetic analysis based on 16S rRNA gene sequences showed that strains 273M-4 and Sam97 were most closely related to Thalassotalea ponticola KCTC 42155, with sequence similarities of 97.

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Existing research has underscored the vital interplay between host organisms and their associated microbiomes, which affects health and function. In both plants and animals, host factors critically shape microbial communities and influence growth, health, and immunity. Post-harvest plants, such as those used in kimchi, a traditional Korean dish, offer a unique avenue for exploring host-microbe dynamics during fermentation.

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A Gram-stain-positive, non-spore-forming, and obligate anaerobic bacteria designated strain CBA3647 was isolated from a horse faecal sample in Jeju, Republic of Korea. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain CBA3647 formed a distinct phyletic lineage from closely related species within the genus . Based on comparative analysis of 16S rRNA gene sequences, ATCC 27337 is most closely related to strain CBA3647 with a 16S rRNA gene similarity of 98.

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Article Synopsis
  • Next-generation sequencing has advanced the study of microbial diversity, yet many gut microbiome species remain unidentified.
  • Culturomics has emerged as a key method for growing hard-to-culture microbes by optimizing growth conditions, helping scientists uncover previously inaccessible microorganisms.
  • This review highlights the significance of culturomics in gut microbiome research and proposes new theories for expanding microbial diversity through improved cultivation techniques.*
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Strain CBA3108 is a Gram-positive, non-spore-forming, obligately anaerobic bacterium isolated from horse faecal samples obtained in Jeju Island, Republic of Korea. The cells of CBA3108 are non-motile short rods that have been assessed as catalase-positive and oxidase-negative. Growth of the strain occurs under the following conditions: 25-45 °C (optimum, 35 °C); pH 6-9 (optimum, pH 6); and in the presence of 0-6 % (w/v) NaCl (optimum, 2%).

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A novel, anaerobic, Gram-stain-positive coccoid strain, CBA3646, was isolated from the faeces of a thoroughbred racehorse. Phylogenetic analysis based on 16S rRNA gene sequencing yielded results indicative of CBA3646 representing a member of the genus , with the species most closely related to it being DSM 20463, with a similarity of 94.79 %.

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  • * Phylogenetic analysis indicated that CBA7301 is closely related to the species JCM 17102, sharing 96.2% similarity in 16S rRNA gene sequences.
  • * CBA7301 is characterized as a Gram-negative, strictly anaerobic, rod-shaped bacterium with specific growth conditions and distinctive lipids and fatty acids, and it has been designated as a new species.
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A high-fat diet (HFD) induces low-grade, chronic inflammation throughout the body including the hypothalamus, a key brain region involved in the control of satiety and energy expenditure in central nervous system (CNS). Kimchi is a traditional fermented Korean food, which is recognized as a healthy food. In this study, we evaluated its ability to suppress the obesity-induced inflammation in mice fed an HFD.

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Two novel halophilic archaeal strains, CBA1133 and CBA1134, were isolated from solar salt in South Korea. The 16S rRNA gene sequences of the isolates were identical to each other and were closely related to the genera Natronomonas (92.3-93.

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Here, 2D Siloxene nanosheets are newly applied to functionalize porous laser-induced graphene (LIG) on polydimethylsiloxane, modify the surface chemical properties of LIG, and improve the heterogeneous electron transfer rate. Meanwhile, the newly generated COSi crosslink boosts the binding of LIG and Siloxene. Thus, the Siloxene/LIG composite is used as the basic electrode material for the multifunctional detection of copper (Cu) ions, pH, and temperature in human perspiration.

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  • Kimchi is made by fermenting raw ingredients using lactic acid bacteria, and this study looked at how different ingredients affect fermentation.
  • Four types of kimchi were tested based on their primary ingredients: kimchi cabbage, green onion, leaf mustard, and young radish, which showed variations in the types of bacteria present.
  • Results indicated that the microbial community and the profiles of metabolites (like sugars and acids) varied significantly depending on the main ingredient used.
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Six different fermented vegetables were collected from Zhejiang Province, China, to explore the associated bacterial community using a high-throughput sequencing platform. A total of 24 phyla, 274 families and 569 genera were identified from 6 samples. Firmicutes and Proteobacteria were the main phyla in all of the samples.

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  • Researchers isolated a new Gram-positive, rod-shaped, anaerobic bacterium, strain CBA3637, from the Geum River sediment, showing it thrives at 30°C, 0% salt, and a pH of 7.
  • Phylogenetic analysis revealed its closest relative is Aminipila butyrica, with about 96.6-96.7% similarity in 16S rRNA gene sequence.
  • The study proposes that strain CBA3637 represents a new species, named Aminipila terrae, characterized by unique metabolic pathways and specific fatty acid profiles.
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  • - Strain CBA3638, isolated from the sediment of the Geum River in South Korea, is a Gram-positive, strictly anaerobic, rod-shaped bacterium optimal for growth at 37 °C, pH 7.0, and in 1.0% NaCl.
  • - Phylogenetic analysis identifies CBA3638 as part of the genus Anaerocolumna in the Lachnospiraceae family, closely related to Anaerocolumna cellulosilytica, with a 15% DNA-DNA hybridization value indicating low genetic relatedness.
  • - The genome of strain CBA3638, which is approximately 5.5 million base pairs long and features multiple rRNA
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  • Extremely halophilic archaea (haloarchaea) from the phylum Euryarchaeota were isolated from solar salt, focusing on strains Halarchaeum sp. CBA1220, Halorubrum sp. CBA1229, and Halolamina sp. CBA1230.
  • The complete genomes of these strains were sequenced, revealing sizes of approximately 3.17 million to 3.58 million base pairs and high G + C content.
  • These strains contain genes for carbohydrate-active enzymes and stress-tolerance proteins, which may enhance understanding of halophilic organisms and their potential industrial applications.
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  • A new strain of actinobacterium, designated CBA3103, was discovered in sediment from South Korea's Geum River and shows genetic similarities to LZ-22 with 98.47% similarity in 16S rRNA gene sequences.
  • *The strain has specific characteristics: it is Gram-positive, rod-shaped, and thrives best at temperatures of 35°C, pH 7, and low salt concentrations.
  • *Genomic analysis and chemotaxonomy indicate that CBA3103 is a unique species within its genus, proposed to be named sp. nov., with various distinct cellular components and growth conditions.*
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  • Two new strains of extremely halophilic archaea, named CBA1112 and CBA1113, were discovered in solar salt in Korea and belong to the genus Haloplanus.
  • Genome analysis revealed differences in size and G+C content, with both strains showing significant genetic similarities but distinct features.
  • These strains exhibited unique characteristics such as red pigmentation and specific polar lipids, leading to the proposal of naming them Haloplanus rubicundus sp. nov.
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Fermented foods constitute hubs of microbial consortia differentially affecting nutritional and organoleptic properties, quality, and safety. Here we show the origin source of fermentative microbes and fermentation dynamics of kimchi. We partitioned microbiota by raw ingredient (kimchi cabbage, garlic, ginger, and red pepper) to render kimchi fermented by each source-originated microbe pool and applied multi-omics (metataxonomics and metabolomics), bacterial viability, and physiochemical analyses to longitudinally collected samples.

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A Gram-stain-negative and facultatively aerobic bacterium, designated as strain CBA4604, was isolated from a traditional Korean salted and fermented shrimp food (saeu-jeot). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain CBA4604 formed a clearly distinct phyletic lineage from closely related species within the genus Paracoccus. Strain CBA4604 was the most closely related to P.

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White colony-forming yeasts (WCFYs) often appear in fermented foods, depending on the storage method. Despite the ongoing research on fermented foods, the community and genome features of WCFYs have not been well studied. In this study, the community structures of WCFYs on fermented vegetables (kimchi) prepared with various raw materials were investigated using deep sequencing.

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We investigated the effects of jeotgal (fermented fish sauce) on kimchi fermentation, with or without saeu-jeot and myeolchi-jeot. Bacterial community analysis showed that Leuconostoc, Weissella, Lactobacillus, and Tetragenococcus were the dominant genera; however, their succession depended on the presence of jeotgal. Leuconostoc gasicomitatum was the dominant species in kimchi without jeotgal, whereas Weissella koreensis and Lactobacillus sakei were the dominant species in kimchi with myeolchi-jeot and saeu-jeot, respectively.

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Environmental temperature is one of the most important factors for the growth and survival of microorganisms. Here we describe a novel extremely halophilic archaeon (haloarchaea) designated as strain CBA1119 isolated from solar salt. Strain CBA1119 had the highest maximum and optimal growth temperatures (66 °C and 55 °C, respectively) and one of the largest genome sizes among haloarchaea (5.

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A novel extremely halophilic archaeon, designated SAH-A6, was isolated from a sample of commercial rock salt in Ethiopia. Cells of SAH-A6 were aerobic and pleomorphic. The strain was able to grow at concentrations of 15-30 % (w/v) NaCl (optimum 20-25 % NaCl), at pH 6.

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