Publications by authors named "Huilong Du"

Replicating the contractile function of arterial tissues in vitro requires precise control of cell alignment within 3D structures, a challenge that existing bioprinting techniques struggle to meet. In this study, we introduce the voxel-based embedded construction for tailored orientational replication (VECTOR) method, a voxel-based approach that controls cellular orientation and collective behavior within bioprinted filaments. By fine-tuning voxel vector magnitude and using an omnidirectional printing trajectory, we achieve structural mimicry at both the macroscale and the cellular alignment level.

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Avena sterilis, the ancestral species of cultivated oats, is a valuable genetic resource for oat improvement. Here we generated a near-complete 10.99 Gb A.

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  • Wild rice species are important genetic resources for breeding modern crops, especially rice, which is a key global food source.
  • The study presents nearly complete genomes of 13 wild rice species, revealing 101,723 gene families and highlighting significant genetic differences compared to cultivated rice.
  • Findings include extensive genomic variation and less diversity in disease resistance genes in cultivated rice, offering insights into rice evolution and the impacts of domestication and artificial selection.
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The species-rich cosmopolitan genus Rhododendron offers a good system for exploring the genomic mechanisms underlying adaptation to diverse habitats. Here, we report high-quality chromosomal-level genome assemblies of nine species, representing all five subgenera, different altitudinal distributions, and all flower color types of this genus. Further comprehensive genomic analyses indicate diverse adaptive strategies employed by Rhododendron, particularly adaptation to alpine and subalpine habitats by expansion/contraction of gene families involved in pathogen defense and oxidative phosphorylation, genomic convergent evolution, and gene copy-number variation.

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  • Dioecy, a rare sexual system in flowering plants characterized by male and female individuals, may often transition into co-sexual systems, such as monoecy and hermaphroditism.
  • This study discovered that the diploid species Diospyros oleifera shows both monoecious and andro(gyno)monoecious traits, contradicting earlier beliefs that this co-sexual expression was exclusive to polyploid species.
  • The research identified genetic mechanisms, including the presence of the male determinant gene OGI and various genomic changes, that facilitate the shift from dioecy to co-sexuality in D. oleifera, suggesting a stable breakdown of the dioecious system influenced by genomic characteristics.
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  • - The text discusses the adaptability and forage quality of a dominant perennial grass in the Eurasian Steppe, highlighting the lack of breeding efforts that limits its ecological restoration and productivity potential.
  • - A high-quality 7.85-Gb genome was sequenced, revealing its allotetraploid origin from a cross between two subgenomes, with significant genome expansion due to transposon activity over millions of years.
  • - The research also established a genetic transformation system and successfully employed CRISPR/Cas9 to knock out a specific microRNA, resulting in increased yield-related traits, thus providing important genomic resources for future breeding efforts.
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Rheum officinale, a member of the Polygonaceae family, is an important medicinal plant that is widely used in traditional Chinese medicine. Here, we report a 7.68-Gb chromosome-scale assembly of R.

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  • Extreme environments are highly vulnerable to climate change, risking specialized species like the moss Takakia lepidozioides, which could face high extinction rates.
  • Records show that from 2010 to 2021, temperatures above 4,000 m have risen steeply, impacting the survival of Takakia lepidozioides, which has evolved unique adaptations for extreme conditions.
  • Despite having survived for nearly 400 million years and displaying significant genetic adaptations, Takakia is now threatened by rising UV-B radiation and drastic temperature changes linked to its uplift over the last 65 million years.
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Okra () is an important vegetable crop with high nutritional value. However, the mechanism underlying its high nutrient content remains poorly understood. Here, we present a chromosome-scale genome of okra with a size of 1.

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  • Understanding the genetics behind rubber tree domestication is key to boosting natural rubber production amid rising global demand.
  • A high-quality genome assembly of the rubber tree along with resequencing of various accessions has uncovered important genetic variations and a significant trait linked to domestication, specifically an increased number of laticifer rings.
  • The study identifies HbPSK5 as an essential gene for domestication, promoting rubber production through laticifer differentiation, and potential applications in enhancing rubber content in other plants like the Russian dandelion.
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Background: Pennisetum giganteum (AABB, 2n = 4x = 28) is a C4 plant in the genus Pennisetum with origin in Africa but currently also grown in Asia and America. It is a crucial forage and potential energy grass with significant advantages in yield, stress resistance, and environmental adaptation. However, the mechanisms underlying these advantageous traits remain largely unexplored.

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Plant roots encounter numerous pathogenic microbes that often cause devastating diseases. One such pathogen, Plasmodiophora brassicae (Pb), causes clubroot disease and severe yield losses on cruciferous crops worldwide. Here, we report the isolation and characterization of WeiTsing (WTS), a broad-spectrum clubroot resistance gene from Arabidopsis.

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Setaria italica (foxtail millet), a founder crop of East Asian agriculture, is a model plant for C4 photosynthesis and developing approaches to adaptive breeding across multiple climates. Here we established the Setaria pan-genome by assembling 110 representative genomes from a worldwide collection. The pan-genome is composed of 73,528 gene families, of which 23.

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Common buckwheat (Fagopyrum esculentum) and Tartary buckwheat (Fagopyrum tataricum), the two most widely cultivated buckwheat species, differ greatly in flavonoid content and reproductive mode. Here, we report the first high-quality and chromosome-level genome assembly of common buckwheat with 1.2 Gb.

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Pan-genomics can encompass most of the genetic diversity of a species or population and has proved to be a powerful tool for studying genomic evolution and the origin and domestication of species, and for providing information for plant improvement. Plant genomics has greatly progressed because of improvements in sequencing technologies and the rapid reduction of sequencing costs. Nevertheless, pan-genomics still presents many challenges, including computationally intensive assembly methods, high costs with large numbers of samples, ineffective integration of big data, and difficulty in applying it to downstream multi-omics analysis and breeding research.

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Recently, the safety of workers has gained increasing attention due to the applications of collaborative robots (cobot). However, there is no quantitative research on the impact of cobot behavior on humans' psychological reactions, and these results are not applied to the cobot motion planning algorithms. Based on the concept of the gravity field, this paper proposes a model of the psychological safety field (PSF), designs a comprehensive experiment on different speeds and minimum distances when approaching the head, chest, and abdomen, and obtains the ordinary surface equation of psychological stress about speed and minimum distance by using data fitting.

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Plants belonging to the genus Taraxacum are widespread all over the world, which contain rubber-producing and non-rubber-producing species. However, the genomic basis underlying natural rubber (NR) biosynthesis still needs more investigation. Here, we presented high-quality genome assemblies of rubber-producing T.

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Structural variations (SVs) and gene copy number variations (gCNVs) have contributed to crop evolution, domestication, and improvement. Here, we assembled 31 high-quality genomes of genetically diverse rice accessions. Coupling with two existing assemblies, we developed pan-genome-scale genomic resources including a graph-based genome, providing access to rice genomic variations.

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The bottle gourd (Lagenaria siceraria, Cucurbitaceae) is an important horticultural crop exhibiting tremendous diversity in fruit shape. The genetic architecture of fruit shape variation in this species remains unknown. We assembled a long-read-based, high-quality reference genome (ZAAS_Lsic_2.

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Cultivated rice varieties are all diploid, and polyploidization of rice has long been desired because of its advantages in genome buffering, vigorousness, and environmental robustness. However, a workable route remains elusive. Here, we describe a practical strategy, namely de novo domestication of wild allotetraploid rice.

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