Gut metagenome-derived image augmentation and deep learning improve prediction accuracy of metabolic disease classification.

In recent years, statistics and machine learning methods have been widely used to analyze the relationship between human gut microbial metagenome and metabolic diseases, which is of great significance for the functional annotation and development of microbial communities. In this study, we proposed a new and scalable framework for image enhancement and deep learning of gut metagenome, which could be used in the classification of human metabolic diseases. Each data sample in three representative human gut metagenome datasets was transformed into image and enhanced, and put into the machine learning models of logistic regression (LR), support vector machine (SVM), Bayesian network (BN) and random forest (RF), and the deep learning models of multilayer perceptron (MLP) and convolutional neural network (CNN).

Residual network improves the prediction accuracy of genomic selection.

Genetic improvement of complex traits in animal and plant breeding depends on the efficient and accurate estimation of breeding values. Deep learning methods have been shown to be not superior over traditional genomic selection (GS) methods, partially due to the degradation problem (i.e.

GWLD: an R package for genome-wide linkage disequilibrium analysis.

Linkage disequilibrium (LD) analysis is fundamental to the investigation of the genetic architecture of complex traits (e.g. human disease, animal and plant breeding) and population structure and evolution dynamics.

Detection of plane in remote sensing images using super-resolution.

The object detection of remote sensing image often has low accuracy and high missed or false detection rate due to the large number of small objects, instance level noise and cloud occlusion. In this paper, a new object detection model based on SRGAN and YOLOV3 is proposed, which is called SR-YOLO. It solves the problems of SRGAN network sensitivity to hyper-parameters and modal collapse.

An improved Deeplabv3+ semantic segmentation algorithm with multiple loss constraints.

Aiming at the problems of low segmentation accuracy and inaccurate object boundary segmentation in current semantic segmentation algorithms, a semantic segmentation algorithm using multiple loss function constraints and multi-level cascading residual structure is proposed. The multi-layer cascaded residual unit was used to increase the range of the network layer receptive field. A parallel network was constructed to extract different depth feature information, then different depth feature information and encoder output features are fused to obtain multiple outputs feature which build multiple losses with the label, thereby constraining the model to optimize the network.