Characterisation of Strains and Their Prophages That Carry Horse-Specific Leukocidin Genes .

Leukocidins of (.) are bicomponent toxins that form polymeric pores in host leukocyte membranes, leading to cell death and/or triggering apoptosis. Some of these toxin genes are located on prophages and are associated with specific hosts.

Molecular Characterization of Chimeric Strains from Waterfowl.

is a versatile pathogen that does not only occur in humans but also in various wild and domestic animals, including several avian species. When characterizing isolates from waterfowl, isolates were identified as atypical CC133 by DNA microarray analysis. They differed from previously sequenced CC133 strains in the presence of the collagen adhesin gene ; some also showed a different capsule type and a deviant type.

The History of Bovine Genital Campylobacteriosis in the Face of Political Turmoil and Structural Change in Cattle Farming in Germany.

Contagious bovine genital campylobacteriosis (BGC), also known as bovine venereal campylobacteriosis, is a disease relevant to international trade listed by the World Organization for Animal Health (WOAH). It is caused by subsp. (), one of three subspecies of .

Characterisation of a Isolate Carrying Phage-Borne Enterotoxin E from a European Badger ().

() colonizes up to 30% of all humans and can occasionally cause serious infections. It is not restricted to humans as it can also often be found in livestock and wildlife. Recent studies have shown that wildlife strains of usually belong to other clonal complexes than human strains and that they might differ significantly with regard to the prevalence of genes encoding antimicrobial resistance properties and virulence factors.

Sequence Analysis of Novel Lineages from Wild and Captive Macaques.

is a widespread and common opportunistic bacterium that can colonise or infect humans as well as a wide range of animals. There are a few studies of both methicillin-susceptible (MSSA) and methicillin-resistant (MRSA) isolated from monkeys, apes, and lemurs, indicating a presence of a number of poorly or unknown lineages of the pathogen. In order to obtain insight into staphylococcal diversity, we sequenced strains from wild and captive individuals of three macaque species (, , and ) using Nanopore and Illumina technologies.

Description of Staphylococcal Strains from Straw-Coloured Fruit Bat () and Diamond Firetail () and a Review of their Phylogenetic Relationships to Other Staphylococci.

The phylogenetic tree of the complex consists of several distinct clades and the majority of human and veterinary isolates form one large clade. In addition, two divergent clades have recently been described as separate species. One was named , due to the lack of the "golden" pigment staphyloxanthin.

Zoonotic bacteria in clinically healthy goats in petting zoo settings of zoological gardens in Germany.

Goats and other small ruminants are frequently used as contact animals in petting zoo settings of zoological gardens. However, they are capable to carry a broad spectrum of zoonotic pathogens without clinical signs. In this study, we analysed the presence of different zoonotic pathogens in 300 clinically healthy goats from 14 zoological gardens in Germany.

Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures.

Background: We benchmarked sequencing technology and assembly strategies for short-read, long-read, and hybrid assemblers in respect to correctness, contiguity, and completeness of assemblies in genomes of Francisella tularensis. Benchmarking allowed in-depth analyses of genomic structures of the Francisella pathogenicity islands and insertion sequences. Five major high-throughput sequencing technologies were applied, including next-generation "short-read" and third-generation "long-read" sequencing methods.

Molecular Characterization of Isolated from Human and Food Samples in Northern Algeria.

is a commensal resident of the skin and nasal cavities of humans and can cause various infections. Some toxigenic strains can contaminate food matrices and cause foodborne intoxications. The present study aimed to provide relevant information (clonal complex lineages, types, virulence and antimicrobial resistance-associated genes) based on DNA microarray analyses as well as the origins and dissemination of several circulating clones of 60 isolated from food matrices ( = 24), clinical samples ( = 20), and nasal carriers ( = 16) in northern Algeria.

Identification and characterization of multidrug-resistant ESBL-producing Salmonella enterica serovars Kentucky and Typhimurium isolated in Tunisia CTX-M-61/TEM-34, a novel cefotaxime-hydrolysing β-lactamase of Salmonella.

Aims: Molecular characterization of extended-spectrum β-lactamases (ESBLs) among Salmonella Kentucky and Typhimurium isolates: partial sequence analysis of the types of β-lactamases found in these isolates, clonality, resistance and supposed emergence of ESBL-producing strains.

Methods And Results: A retrospective study surveyed the ESBLs occurring in a total of 1404 Salmonella Kentucky and Typhimurium isolates collected over a 5-year period in Tunisia. Antimicrobial susceptibility tests, ESBL phenotype determination (double-disc synergy) were performed.

Bacterial gastroenteritis caused by the putative zoonotic pathogen : First reported case in Germany.

Foodborne campylobacteriosis is the most common cause of human bacterial enteritis in Germany. and are the main causative agents for enteric disease, but a number of other species are involved, including rare ones. These rare spp.

Derby: A Comparative Genomic Analysis of Strains From Germany.

subspecies serovar Derby (. Derby) is one of the most frequent causes for salmonellosis in humans and animals. Understanding the genetic diversity of .

Characterisation of S. aureus/MRSA CC1153 and review of mobile genetic elements carrying the fusidic acid resistance gene fusC.

While many data on molecular epidemiology of MRSA are available for North America, Western Europe and Australia, much less is known on the distribution of MRSA clones elsewhere. Here, we describe a poorly known lineage from the Middle East, CC1153, to which several strains from humans and livestock belong. Isolates were characterised using DNA microarrays and one isolate from the United Arab Emirates was sequenced using Nanopore technology.

Antimicrobial Susceptibility and Genomic Analysis of and , Two Rarely Detected Species.

and are two rarely detected species. In the study, we analyzed the antimicrobial susceptibility and provide detailed insights into the genotype and phylogeny of both species using whole-genome sequencing. Thermophilic species are the most common bacterial foodborne pathogens causing gastroenteritis in humans worldwide.

Newly Isolated Animal Pathogen Is Cytotoxic to Human Epithelial Cells.

is a newly identified animal pathogen of forest animals such as roe deer and wild boars. The species is closely related to the emerging human pathogen and the widely distributed animal pathogen . In this study, strain W25 was characterized with respect to its interaction with human cell lines.

Phylogenomic Analysis of Reveals a Clonal Structure of Insertion Element IS Positive Genomes.

Subspecies of the species are associated with specific host niches including mammals and reptiles. subsp. is a zoonotic pathogen infecting humans.

Molecular investigations on a chimeric strain of Staphylococcus aureus sequence type 80.

A PVL-positive, methicillin-susceptible Staphylococcus aureus was cultured from pus from cervical lymphadenitis of a patient of East-African origin. Microarray hybridisation assigned the isolate to clonal complex (CC) 80 but revealed unusual features, including the presence of the ORF-CM14 enterotoxin homologue and of an ACME-III element as well as the absence of etD and edinB. The isolate was subjected to both, Illumina and Nanopore sequencing allowing characterisation of deviating regions within the strain´s genome.

Using affinity propagation clustering for identifying bacterial clades and subclades with whole-genome sequences of Francisella tularensis.

By combining a reference-independent SNP analysis and average nucleotide identity (ANI) with affinity propagation clustering (APC), we developed a significantly improved methodology allowing resolving phylogenetic relationships, based on objective criteria. These bioinformatics tools can be used as a general ruler to determine phylogenetic relationships and clustering of bacteria, exemplary done with Francisella (F.) tularensis.

from Water Poultry: Insights into Antimicrobial Resistance, Virulence and Heavy Metal Resistance.

is the most prevalent species and has been isolated from a wide variety of sources. This species is an emerging foodborne and zoonotic pathogen because the bacteria can be transmitted by contaminated food or water and can cause acute enteritis in humans. Currently, there is no database to identify antimicrobial/heavy metal resistance and virulence-associated genes specific for .