Publications by authors named "Hormat Rhein"

Article Synopsis
  • - Pecan scab, caused by Venturia effusa, severely impacts pecan crops in the southeastern U.S., with resistance influenced by host genetics interacting with different disease forms.
  • - A transcriptome analysis of the 'Desirable' pecan cultivar revealed distinct gene expression patterns when exposed to both pathogenic and non-pathogenic scab isolates, particularly highlighting early defense mechanisms.
  • - The study identified key gene modules linked to defense responses, suggesting that the early activation of signal transduction and barrier formation are critical for resistance against the fungus, laying the groundwork for future resistance gene research.
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Calcium (Ca) is essential for plant growth and cellular homeostasis, with cation exchangers (CAXs) regulating Ca transport into plant vacuoles. In Arabidopsis, multiple CAXs feature a common structural arrangement, comprising an N-terminal autoinhibitory domain followed by two pseudosymmetrical modules. Mutations in CAX1 enhance stress tolerance, notably tolerance to anoxia (a condition marked by oxygen depletion), crucial for flood resilience.

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Multiple Arabidopsis H /Cation exchangers (CAXs) participate in high-capacity transport into the vacuole. Previous studies have analysed single and double mutants that marginally reduced transport; however, assessing phenotypes caused by transport loss has proven enigmatic. Here, we generated quadruple mutants (cax1-4: qKO) that exhibited growth inhibition, an 85% reduction in tonoplast-localised H /Ca transport, and enhanced tolerance to anoxic conditions compared to CAX1 mutants.

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The specific foods to eat for optimal nutrition remain ill-defined. Studies using plantbased diets or milk suggest that vesicles, termed exosomes, and small RNAs termed microRNAs (miRNAs) are health promoting components in foods. However, numerous studies refute the potential of dietary cross-kingdom communication of exosomes and miRNAs.

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Based on the availability of oxygen, plant growth environment can be normoxic (normal environment), hypoxic (reduced oxygen, <21%), or anoxic (complete depletion of oxygen). Hypoxic/anoxic environment is created when a plant is exposed to stresses such as submergence, flooding, or pathogen attack. Survival of the plants following stress conditions is in part dependent on their ability to overcome the stress induced by anoxia/hypoxia conditions.

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In perennial plants such as pecan, once reproductive maturity is attained, there are genetic switches that are regulated and required for flower development year after year. Pecan trees are heterodichogamous with both pistillate and staminate flowers produced on the same tree. Therefore, defining genes exclusively responsible for pistillate inflorescence and staminate inflorescence (catkin) initiation is challenging at best.

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A plant's oxygen supply can vary from normal (normoxia) to total depletion (anoxia). Tolerance to anoxia is relevant to wetland species, rice (Oryza sativa) cultivation, and submergence tolerance of crops. Decoding and transmitting calcium (Ca) signals may be an important component to anoxia tolerance; however, the contribution of intracellular Ca transporters to this process is poorly understood.

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Genome-enabled biotechnologies have the potential to accelerate breeding efforts in long-lived perennial crop species. Despite the transformative potential of molecular tools in pecan and other outcrossing tree species, highly heterozygous genomes, significant presence-absence gene content variation, and histories of interspecific hybridization have constrained breeding efforts. To overcome these challenges, here, we present diploid genome assemblies and annotations of four outbred pecan genotypes, including a PacBio HiFi chromosome-scale assembly of both haplotypes of the 'Pawnee' cultivar.

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