Publications by authors named "Honglin Cao"

Article Synopsis
  • Ottelia Pers. is an aquatic plant genus originating from China, with species like O. alismoides being globally distributed but endangered due to habitat loss and pollution.
  • This study presents the first genome assembly of O. alismoides, revealing its unique carbon dioxide-concentrating mechanisms and setting the groundwork for genetic conservation efforts.
  • The genome assembly includes approximately 6.45 billion base pairs and 116,176 predicted genes, with a high completeness score, and the data enables functional annotation for comparative genomic studies.
View Article and Find Full Text PDF

Objectives: Brasenia is a monotypic genus in the family of Cabombaceae. The only species, B. schreberi, is a macrophyte distributed worldwide.

View Article and Find Full Text PDF

Mangrove forests have high ecological, social and economic values, but due to environmental changes and human activities, natural mangrove forests have experienced serious degradations and reductions in distribution area worldwide. In the coastal zones of southern China, an introduced mangrove species, Sonneratia apetala, has been extensively used for mangrove restoration because of its rapid growth and strong environmental adaptability. However, little is known about how soil microorganisms vary with the restoration stages of the afforested mangrove forests.

View Article and Find Full Text PDF

Euryodendron excelsum is in a monotypic genus Euryodendron, endemic to China. It has intermediate morphisms in the Pentaphylacaceae or Theaceae families, which make it distinct. Due to anthropogenic disturbance, E.

View Article and Find Full Text PDF

Objectives: Castanopsis is the third largest genus in the Fagaceae family and is essentially tropical or subtropical in origin. The species in this genus are mainly canopy-dominant trees, and the key components of evergreen broadleaved forests play a crucial role in the maintenance of local biodiversity. Castanopsis chinensis, distributed from South China to Vietnam, is a representative species.

View Article and Find Full Text PDF
Article Synopsis
  • The Erythrophleum genus, part of the Fabaceae family, has about 10 species and is valued for its high-quality wood and medicinal properties, particularly Erythrophleum fordii, which is overexploited in China due to its uses.
  • This study produced extensive genomic data of E. fordii, including approx. 160.8 Gb of long reads, 126.0 Gb of short reads, and 29.0 Gb of RNA-seq reads, resulting in a comprehensive genomic assembly of nearly 865 million base pairs.
  • The assembly demonstrated 98.7% completeness and included a significant amount of repetitive sequences along with
View Article and Find Full Text PDF

Recent climate change has been shown to alter aspects of forest plant demography, such as growth and mortality, but less attention has been focused on how climate change alters the reproduction of plant populations through time. We hypothesized that the plant seed production would respond to climate change, and that the response would differ according to plant life form and functional traits. We tested this hypothesis by examining climate change from 2005 to 2020 and by determining the temporal trends of seed rain and seed production from plants with different life forms (e.

View Article and Find Full Text PDF

Objectives: Nepenthes belongs to the monotypic family Nepenthaceae, one of the largest carnivorous plant families. Nepenthes species show impressive adaptive radiation and suffer from being overexploited in nature. Nepenthes mirabilis is the most widely distributed species and the only Nepenthes species that is naturally distributed within China.

View Article and Find Full Text PDF

During our continuous investigation of natural, herbal inhibitors of microglial over-activation in the Euphorbiaceae family, two plants of the Vernicia genus showed remarkable inhibitory effects on nitric oxide (NO) production in over-activated microglia. In this study, bioactivity-guided phytochemical research on the active fraction of the roots of V. montana was carried out.

View Article and Find Full Text PDF

is endemic to China. It is named after its purple flowers. It is a small tree only up to 3 m.

View Article and Find Full Text PDF

is endemic in Taiwan island and is a unique and epiphytic species. Here, we report its complete chloroplast genome. The length of the chloroplast genome is 230,777 bp, with a large single-copy region of 146,155 bp, a small single-copy region of 72,082 bp, and a pair of inverted repeat regions (IRA) of 6,270 bp each.

View Article and Find Full Text PDF

is a particular genus in the Fabaceae family with its striking seeds. The genus is a newly reported and critically endangered species, and field investigations have indicated that there are only hundreds of it. For the effective conservation, we report its complete mitochondrial genome.

View Article and Find Full Text PDF

is newly reported and endemic to China. The genome of is 207,311 bp in length, including a large single-copy region of 190,689 bp and a small single-copy region of 2582 bp, a pair of inverted repeat regions (IRA) of 7020 bp each. The genome encodes 110 genes, comprising 77 protein-coding genes, four ribosomal RNA genes, and 29 transfer RNA genes.

View Article and Find Full Text PDF

(Begoniaceae) is a large, pantropically distributed genus, comprising more than 1900 species. Due to poorly available genome resources, the phylogeny of this species-rich genus is still challenged. .

View Article and Find Full Text PDF

is a genus in the family Fabaceae, with only 11 species. They are distributed throughout Asia and Africa. , a newly reported species, is native to China with a restricted distribution.

View Article and Find Full Text PDF

, endemic to China, is an economically important evergreen tree species and a source of agarwood. Due to the high market demand for agarwood, this species is heavily overexploited in the wild and is now listed as an endangered species. Although its nuclear and chloroplast genomes have been previously reported, little is known about its mitochondrial genome.

View Article and Find Full Text PDF

is an important hardwood species and its seeds are popular as decorative jewelry. Currently, this species is threatened in the natural forests due to habitat destruction. Here, we first report the chloroplast genome of for future studies in ecology, phylogeny, and conservation.

View Article and Find Full Text PDF

is a critically Endangered species that is exclusively distributed in Xiangtoushan National Nature Reserve in Guangdong province, China. At present, the population of the species is made up of less than 100 adult individuals. Here, we are the first to report the complete chloroplast genome sequence of .

View Article and Find Full Text PDF

woodlands are naturally or artificially formed green areas in southern China. They are precious for maintaining ecosystem balance in modern semiurban environments. However, they are generally small and geographically isolated from each other, and the status of genetic diversity of the plant species within them has been almost neglected.

View Article and Find Full Text PDF

The competition-colonization trade-off, by which species can partition spatial niches, is a potentially important mechanism allowing the maintenance of species diversity in plant communities. We examined whether there was evidence for this trade-off among tree species in a subtropical forest and how it correlated with eight functional traits. We developed and estimated a metric for colonization ability that incorporates both fecundity and seed dispersal based on seed trap data and the sizes and distributions of adult trees.

View Article and Find Full Text PDF

Fruit type, an important reproductive trait, is closely related to reproduction strategy, community dynamics and biotic interactions. However, limited research has explored the geographic distribution of fruit type and the underlying abiotic factors influencing this on a large scale. Here we aim to study large-scale distribution patterns of fleshy-fruited plant species and the most important environmental drivers for different growth forms in utilizing the fruit type and distribution data for over 27000 plant species in China.

View Article and Find Full Text PDF

Tropical forests play a disproportionately important role in the global carbon (C) cycle, but it remains unclear how local environments and functional diversity regulate tree aboveground C storage. We examined how three components (environments, functional dominance and diversity) affected C storage in Dinghushan 20-ha plot in China. There was large fine-scale variation in C storage.

View Article and Find Full Text PDF

Tree mortality and recruitment are key factors influencing forest dynamics, but the driving mechanisms of these processes remain unclear. To better understand these driving mechanisms, we studied forest dynamics over a 5-year period in a 20-ha sub-tropical forest in the Dinghushan Nature Reserve, South China. The goal was to identify determinants of tree mortality/recruitment at the local scale using neighborhood analyses on some locally dominant tree species.

View Article and Find Full Text PDF
Article Synopsis
  • The study aims to explore the genetic diversity of the poorly understood genus Beilschmiedia, particularly focusing on B. roxburghiana, using microsatellite markers.
  • Utilizing a microsatellite-enriched library and PCR techniques, 22 markers were developed, with 10 showing significant polymorphism in the population studied.
  • The findings suggest that clonal reproduction is the primary reproductive strategy for B. roxburghiana in the examined area, and the identified microsatellites will aid future research on its genetic diversity and structure.
View Article and Find Full Text PDF