Publications by authors named "Homa Papoli Yazdi"

Sex chromosomes have evolved repeatedly across the tree of life and often exhibit extreme size dimorphism due to genetic degeneration of the sex-limited chromosome (e.g. the W chromosome of some birds and Y chromosome of mammals).

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Hybridization can result in novel allelic combinations which can impact the hybrid phenotype through changes in gene expression. While misexpression in F hybrids is well documented, how gene expression evolves in stabilized hybrid taxa remains an open question. As gene expression evolves in a stabilizing manner, break-up of co-evolved cis- and trans-regulatory elements could lead to transgressive patterns of gene expression in hybrids.

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Do Z chromosomes evolve at a faster rate than autosomes in Lepidoptera? Mongue et al. show that Z-linked genes in two Lepidopteran species evolve faster than autosomal genes. However, the neo-sex chromosome differs from the ancestral chromosome and shows adaptive evolution for genes with a biased expression in the heterogametic sex.

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Sexually antagonistic (SA) genetic variation-in which alleles favored in one sex are disfavored in the other-is predicted to be common and has been documented in several animal and plant populations, yet we currently know little about its pervasiveness among species or its population genetic basis. Recent applications of genomics in studies of SA genetic variation have highlighted considerable methodological challenges to the identification and characterization of SA genes, raising questions about the feasibility of genomic approaches for inferring SA selection. The related fields of local adaptation and statistical genomics have previously dealt with similar challenges, and lessons from these disciplines can therefore help overcome current difficulties in applying genomics to study SA genetic variation.

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The hallmark of sex chromosome evolution is the progressive suppression of recombination which leads to subsequent degeneration of the non-recombining chromosome. In birds, species belonging to the two major clades, Palaeognathae (including tinamous and flightless ratites) and Neognathae (all remaining birds), show distinctive patterns of sex chromosome degeneration. Birds are female heterogametic, in which females have a Z and a W chromosome.

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Article Synopsis
  • Recombination arrest is crucial for forming distinct sex chromosomes, and structural changes like inversions can suppress recombination.
  • The lack of a solid chromosome-level assembly from Paleognathae birds has hindered the understanding of their sex chromosome evolution, prompting researchers to create a detailed genetic map of the ostrich's Z chromosome.
  • The study reveals 25 inferred Z-linked inversions in birds and identifies key structural changes that may have contributed to the evolution of sex chromosomes, highlighting the importance of high-quality chromosome assemblies in studying genome evolution.
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Degeneration of the nonrecombining chromosome is a common feature of sex chromosome evolution, readily evident by the presence of a pair of largely heteromorphic chromosomes, like in eutherian mammals and birds. However, in ratites (order Palaeognathae, including, e.g.

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