Publications by authors named "Hilde Nilsen"

Article Synopsis
  • - The Integrator complex consists of at least 13 conserved proteins that interact with RNA polymerase II to regulate snRNA processing and gene expression.
  • - This study highlights the role of Integrator subunit 6 (INTS-6) in the DNA damage response, specifically its necessity for forming RAD-51 foci after X-ray radiation exposure.
  • - The presence of INTS-6 is also shown to be essential for the phosphorylation of CDK-1 at Tyr-15, contributing to our understanding of how the Integrator complex participates in DNA repair processes.
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Parkinson's disease (PD) is associated with a reduction in 26/20S proteasome and mitochondrial function and depletion of dopamine. Activation of mitochondrial function with the NAD precursor nicotinamide riboside (NR) is a potential therapeutic for PD. However, despite recently started clinical trials, analysis of NR in mammalian animal PD models is lacking and data in simpler PD models is limited.

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The randomized METIMMOX trial (NCT03388190) examined if patients with previously untreated, unresectable abdominal metastases from microsatellite-stable (MSS) colorectal cancer (CRC) might benefit from potentially immunogenic, short-course oxaliplatin-based chemotherapy alternating with immune checkpoint blockade (ICB). Three of 38 patients assigned to this experimental treatment had metastases from -mutant MSS-CRC, in general a poor-prognostic subgroup explored here. The ≥70-year-old females presented with ascending colon adenocarcinomas with intermediate tumor mutational burden (6.

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Article Synopsis
  • A study was conducted to assess a new treatment approach for metastatic microsatellite-stable colorectal cancer, comparing a control group receiving standard chemotherapy to an experimental group alternating chemotherapy with an immune therapy called nivolumab.
  • Both groups had a similar median progression-free survival (PFS) of about 9.2 months, but older patients (≥60 years) in the experimental group showed a significantly reduced risk of cancer progression.
  • The experimental group had some patients with low C-reactive protein levels achieving a much longer median PFS of 15.8 months, indicating potential benefits for specific subgroups, despite the overall treatment not improving outcomes for the entire group.
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Unhealthy aging poses a global challenge with profound healthcare and socioeconomic implications. Slowing down the aging process offers a promising approach to reduce the burden of a number of age-related diseases, such as dementia, and promoting healthy longevity in the old population. In response to the challenge of the aging population and with a view to the future, Norway and the United Kingdom are fostering collaborations, supported by a "Money Follows Cooperation agreement" between the 2 nations.

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Background: Despite extensive work to identify diagnostic plasma markers for Parkinson's disease (PD), there are still no accepted and validated surrogate biomarkers. Mitophagy-associated proteins (MAPs), including PTEN-induced putative kinase 1 (PINK1), Parkin, phosphoglycerate mutase 5 (PGAM5), BCL2 interacting protein 3 (BNIP3), and phosphorylated-TBK1 (p-TBK1), are, to our best knowledge, not well studied as a panel of biomarkers of neurodegeneration in PD.

Methods: The study population comprised 116 age-matched controls (HC), 179 PD patients, alongside and 90 PD syndromes (PDs) divided between two cohorts: (i) the modeling cohort (cohort 1), including 150 PD, 97 HC, and 80 PDs; and (ii) the validated cohort (cohort 2), including 29 PD, 19 HC, and 10 PDs.

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Background: Supplementation of nicotinamide riboside (NR) ameliorates neuropathology in animal models of ataxia telangiectasia (A-T). In humans, short-term NR supplementation showed benefits in neurological outcome.

Objectives: The study aimed to investigate the safety and benefits of long-term NR supplementation in individuals with A-T.

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The antiviral DNA cytosine deaminase APOBEC3B has been implicated as a source of mutation in many cancers. However, despite years of work, a causal relationship has yet to be established in vivo. Here, we report a murine model that expresses tumor-like levels of human APOBEC3B.

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Many high-throughput sequencing datasets can be represented as objects with coordinates along a reference genome. Currently, biological investigations often involve a large number of such datasets, for example representing different cell types or epigenetic factors. Drawing overall conclusions from a large collection of results for individual datasets may be challenging and time-consuming.

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Chemically modified nucleic acid bases are sources of genomic instability and mutations but may also regulate gene expression as epigenetic or epitranscriptomic modifications. Depending on the cellular context, they can have vastly diverse impacts on cells, from mutagenesis or cytotoxicity to changing cell fate by regulating chromatin organisation and gene expression. Identical chemical modifications exerting different functions pose a challenge for the cell's DNA repair machinery, as it needs to accurately distinguish between epigenetic marks and DNA damage to ensure proper repair and maintenance of (epi)genomic integrity.

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Article Synopsis
  • About 50% of cancer patients need radiotherapy, and while proton therapy offers improved precision for brain tumors, it still causes structural and functional changes in the brain.
  • A study using nematodes exposed to protons showed that mitochondrial dysfunction occurs, including a loss of mitochondrial membrane potential and the induction of oxidative stress after radiation.
  • The findings also revealed an increase in mitochondrial DNA copy number and evidence of autophagy in the irradiated area, suggesting that understanding these molecular pathways could lead to new treatments for radiation-induced damage.
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  • Severe COVID-19 is linked to a harmful inflammatory response, which the study aimed to better understand by analyzing gene expression patterns in patients.
  • Researchers studied blood samples from 17 severe COVID-19 patients, 15 with moderate symptoms, and 11 healthy controls, all of whom were unvaccinated.
  • Findings indicated heightened activation of immune components like neutrophils and cytokines in severe cases, with a noted shift towards a less mature neutrophil phenotype over time, while interferon signaling was more active early on but did not correlate with severe disease progression.
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Excessive iron accumulation or deficiency leads to a variety of pathologies in humans and developmental arrest in the nematode . Instead, sub-lethal iron depletion extends lifespan. Hypoxia preconditioning protects against severe hypoxia-induced neuromuscular damage across species but it has low feasible application.

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RNA polymerase I transcribes ribosomal DNA to produce precursor 47S rRNA. Post-transcriptional processing of this rRNA generates mature 28S, 18S and 5.8S rRNAs, which form the ribosomes, together with 5S rRNA, assembly factors and ribosomal proteins.

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Article Synopsis
  • Improved transcriptomic sequencing technologies allow for extensive longitudinal experiments, generating large datasets, but there are currently no comprehensive analysis methods for these experiments.
  • This article introduces the TimeSeries Analysis pipeline (TiSA), which uses differential gene expression, clustering, and functional enrichment analysis to analyze transcriptomic data over time.
  • TiSA is versatile, capable of analyzing various types of datasets, including those with missing data, and provides visual tools like PCA and heatmaps to help interpret results clearly.
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The antiviral DNA cytosine deaminase APOBEC3B has been implicated as a source of mutation in many different cancers. Despite over 10 years of work, a causal relationship has yet to be established between APOBEC3B and any stage of carcinogenesis. Here we report a murine model that expresses tumor-like levels of human APOBEC3B after Cre-mediated recombination.

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Article Synopsis
  • Interfering with aging mechanisms can improve healthy longevity, and targeting multiple aging hallmarks could be more effective than focusing on just one.
  • Antarctic krill oil, rich in omega-3 fatty acids and other compounds, was studied for its potential to promote healthy aging in a model of Parkinson’s disease, showing protective effects on dopamine neurons and cognitive functions.
  • The research indicates that krill oil alters gene expression to combat various aging issues like oxidative stress and mitochondrial dysfunction, suggesting its potential for further research in promoting healthy aging.
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Fatty liver diseases are a major health threat across the western world, leading to cirrhosis and premature morbidity and mortality. Recently, a correlation between the base excision repair enzyme SMUG1 and metabolic homeostasis was identified. As the molecular mechanisms remain unknown, we exploited a SMUG1-knockout mouse model to gain insights into this association by characterizing the liver phenotype in young vs old SMUG1-null mice.

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Mitochondria are the primary sites for cellular energy production and are required for many essential cellular processes. Mitochondrial DNA (mtDNA) is a 16.6 kb circular DNA molecule that encodes only 13 gene products of the approximately 90 different proteins of the respiratory chain complexes and an estimated 1,200 mitochondrial proteins.

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Single-strand selective uracil-DNA glycosylase 1 (SMUG1) initiates base excision repair (BER) of uracil and oxidized pyrimidines. SMUG1 status has been associated with cancer risk and therapeutic response in breast carcinomas and other cancer types. However, SMUG1 is a multifunctional protein involved, not only, in BER but also in RNA quality control, and its function in cancer cells is unclear.

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Background: Aminoacyl tRNA-synthetases are ubiquitously-expressed enzymes that attach amino acids to their cognate tRNA molecules. Mutations in several genes encoding aminoacyl tRNA-synthetases, have been associated with peripheral neuropathy, i.e.

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Article Synopsis
  • The text discusses the use of a genetic model organism for studying aging, focusing on its contributions to understanding neurodegeneration and DNA repair mechanisms.
  • It highlights that, despite its usefulness in aging research, this organism has not been widely used to explore DNA repair and genomic instability, which are crucial in aging and rare neurological disorders.
  • The article emphasizes the importance of DNA repair pathways and their effects on aging-related issues like mitochondrial dysfunction and telomere maintenance, proposing that this organism is ideal for studying the relationship between DNA repair and neurodegeneration.
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Background: Matching treatment based on tumour molecular characteristics has revolutionized the treatment of some cancers and has given hope to many patients. Although personalized cancer care is an old concept, renewed attention has arisen due to recent advancements in cancer diagnostics including access to high-throughput sequencing of tumour tissue. Targeted therapies interfering with cancer specific pathways have been developed and approved for subgroups of patients.

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