Publications by authors named "Heejin Lim"

Article Synopsis
  • Widespread interest in nanoscale pillar structures for optical devices faces challenges like high equipment costs and limited scalability due to traditional manufacturing methods.
  • The study introduces a novel technique using thermally assisted nanotransfer printing to create highly uniform nanoscale pillar arrays, achieving an impressive density of 0.1 tera-pillars per square inch.
  • These nanopillars are demonstrated as effective surface-enhanced Raman scattering sensors, providing consistent performance and sensitivity at very low concentrations while maintaining durability for multiple uses.
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  • Peripheral neuropathies (PNs) affect elderly individuals and are linked to Schwann cell dysfunction and irreversible Wallerian degeneration (WD), with few therapeutic options available.
  • The study explored the effects of the chemical inhibitor XMU-MP-1 (XMU) on WD, finding that it inhibited the harmful processes in Schwann cells across multiple research models.
  • The research highlights the involvement of the Hippo/MST pathway and suggests that XMU could serve as a new multitargeted treatment strategy for elderly patients suffering from PNs.
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Background: Kelch-like ECH-associated protein 1 (KEAP1)-nuclear factor erythroid- 2-related factor 2 (NRF2) pathway is a major regulator protecting cells from oxidative and metabolic stress. Studies have revealed that this pathway is involved in mediating resistance to cytotoxic chemotherapy and immunotherapy; however, its implications in oncogene-addicted tumors are largely unknown. This study aimed to elucidate whether this pathway could be a potential therapeutic target for epidermal growth factor receptor (EGFR)-mutant non-small cell lung cancer.

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Introduction: Reactive oxygen species modulator 1 (Romo1) is a novel protein that is critically involved in the intracellular production of reactive oxygen species. Evidence has revealed that Romo1 is associated with treatment outcomes of various human malignancies, including lung cancer. However, the clinical implications of this protein in surgically resected lung cancers harboring epidermal growth factor receptor (EGFR) mutations have not been investigated.

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  • Time-of-flight secondary ion mass spectrometry (ToF-SIMS) is a valuable tool for analyzing biological samples, but its effectiveness is limited by the need for an ultrahigh vacuum environment and matrix effects that complicate measurements.
  • The study introduces a new platform that allows for quick and efficient quantitative analysis of amino acids using a microarray with freeze-dried solution drops that form matrix deposits.
  • By mixing amino acid solutions with stable isotope-labeled phenylalanine and utilizing the microarray setup, the researchers achieved a lower quantitation limit of less than 10 μM for amino acids in their samples.
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  • Advances in technology allow for detailed study of individual cells, revealing differences among them in complex biological systems.
  • Historically, most research centered on analyzing nucleic acids, while protein and metabolite studies using mass spectrometry (MS) were less developed until now.
  • This review highlights the latest progress in MS techniques for single-cell analysis and their implications for understanding biology and medicine.
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Although many efforts are undertaken to treat peripheral demyelinating neuropathies based on biochemical interventions, unfortunately, there is no approved treatment yet. Furthermore, previous studies have not shown improvement of the myelin membrane at the biomolecular level. Here, an electroceutical treatment is introduced as a biophysical intervention to treat Charcot-Marie-Tooth (CMT) disease-the most prevalent peripheral demyelinating neuropathy worldwide-using a mouse model.

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As the myelin sheath is crucial for neuronal saltatory conduction, loss of myelin in the peripheral nervous system (PNS) leads to demyelinating neuropathies causing muscular atrophy, numbness, foot deformities and paralysis. Unfortunately, few interventions are available for such neuropathies, because previous pharmaceuticals have shown severe side effects and failed in clinical trials. Therefore, exploring new strategies to enhance PNS myelination is critical to provide solution for such intractable diseases.

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New methods to analyze cells and tissues in ambient condition without any harsh chemical fixation or physical freezing and drying are summarized in this report. The first approach, an atmospheric pressure mass spectrometry imaging method, is based on laser ablation in atmospheric pressure assisted by atmospheric plasma and nanomaterials such as nanoparticles and graphene to enhance laser ablation. The second one is based on secondary ion mass spectrometry (SIMS) imaging of live cells in solution capped with single-layer graphene to preserve intact and hydrated biological samples even under ultrahigh vacuum for SIMS bio-imaging in solution.

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The ε4 allele of APOE-encoding apolipoprotein (ApoE) is one of the strongest genetic risk factors for Alzheimer's disease (AD). One of the overarching questions is whether and how this astrocyte-enriched risk factor initiates AD-associated pathology in neurons such as amyloid-β (Aβ) accumulation. Here, we generate neurons and astrocytes from isogenic human induced pluripotent stem cells (hiPSCs) carrying either APOE ε3 or APOE ε4 allele and investigate the effect of astrocytic ApoE4 on neuronal Aβ production.

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There is growing evidence that myeloid-derived suppressor cells (MDSCs) are directly involved in all stages leading to metastasis. Many mechanisms for this effect have been proposed, but mechanisms of coregulation between tumor cells and MDSCs remain poorly understood. In this study, we demonstrate that MDSCs are a source of milk fat globule-epidermal growth factor (EGF) factor 8 (MFGE8), which is known to be involved in tumor metastasis.

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We report a means by which atomic and molecular secondary ions, including cholesterol and fatty acids, can be sputtered through single-layer graphene to enable secondary ion mass spectrometry (SIMS) imaging of untreated wet cell membranes in solution at subcellular spatial resolution. We can observe the intrinsic molecular distribution of lipids, such as cholesterol, phosphoethanolamine and various fatty acids, in untreated wet cell membranes without any labeling. We show that graphene-covered cells prepared on a wet substrate with a cell culture medium reservoir are alive and that their cellular membranes do not disintegrate during SIMS imaging in an ultra-high-vacuum environment.

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Single protein imaging and understanding their interactions are of paramount importance to understand the life phenomena. Recently reported multiplex protein SIMS imaging methodology using metal-oxide nanoparticle conjugated antibodies can be extended to a single protein imaging methodology using He ion microscopy (HIM). It is proposed here that single protein can be imaged in the microscale and the nanoscale by the complementary use of SIMS and HIM.

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The biofouling of marine organisms on a surface induces serious economic damage. One of the conventional anti-biofouling strategies is the use of toxic chemicals. In this study, a new eco-friendly oleamide-PDMS copolymer (OPC) is proposed for sustainable anti-biofouling and effective drag reduction.

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Article Synopsis
  • Blocking the PD-1/PD-L1 interaction with monoclonal antibodies, like tislelizumab, has significantly improved cancer treatment outcomes.
  • The crystal structure of PD-1 bound to tislelizumab shows that CDR3 from the heavy chain is crucial for this interaction, while the light chain contributes differently.
  • Analyzing various therapeutic antibodies against PD-1 helps enhance our understanding of how to effectively inhibit this pathway in cancer immunotherapy.
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Article Synopsis
  • Recent advances in mass spectrometry imaging highlight the need for high-resolution techniques to better understand complex biomolecular interactions related to life and disease.
  • The study introduces a new multiplex protein imaging method using secondary ion mass spectrometry (SIMS) with metal oxide nanoparticle-conjugated antibodies, achieving less than 300 nm spatial resolution without damaging cells.
  • This technique was applied to hippocampal tissue samples from control and Alzheimer's disease model mice, revealing that the proximity of protein clusters in the brain is influenced by aging and disease progression, which could aid in understanding pathological mechanisms at the cellular level.
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Time-of-flight secondary ion mass spectrometry (ToF-SIMS) is a powerful tool to obtain both chemical information and spatial distribution of specific molecules of interest on a specimen surface. However, since the focused ion beam requires ultrahigh vacuum conditions for desorption and ionization of analytes, proper specimen preparation, such as drying, freeze-drying, and frozen dehydration, is required for ToF-SIMS analysis. In particular, biological specimens with high moisture content generally have a problem of specimen deformation during the normal drying process for a vacuum environment.

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We report on sample preparation methods based on plasma treatment for an improvement of multiple molecular ion images of cellular membranes in the ToF-SIMS method. The air-plasma treatment of fixed cellular samples efficiently removed the organic residues of any solutions used during sample preparation and improved the quality of ToF-SIMS images due to the resulting clean surface. We also studied cell preparation methods that combine single-layer graphene covering with air-plasma treatment to achieve a synergistic effect that eliminates background spectra by organic impurities while minimizing morphological cell deformation in a vacuum environmental analysis.

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The atmospheric pressure mass spectrometric (AP-MS) imaging technology combined with an inverted optical microscopic system is a powerful tool for determining the presence and spatial distributions of specific biomolecules of interest in live tissues. Efficient desorption and ionization are essential to acquire mass spectrometric (MS) information in an ambient environment. In this study, we demonstrate a new and efficient desorption process using a graphene-coated glass substrate and a continuous wave (CW) laser for high-resolution AP-MS imaging of a live hippocampal tissue.

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One of the remaining challenges in material chemistry is to unveil the quantitative compositional/structural information and thermodynamic nature of inorganic materials especially in the initial nucleation and growth step. In this report, we adopted newly developed time-of-flight medium-energy-ion-scattering (TOF-MEIS) spectroscopy to address this challenge and explored heterogeneously grown nanometer-sized calcium phosphate as a model system. With TOF-MEIS, we discovered the existence of calcium-rich nanoclusters (Ca/P ∼ 3) in the presence of the non-collagenous-protein-mimicking passivating ligands.

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Myeloid-derived suppressor cells (MDSCs) play roles in immune regulation during neoplastic and non-neoplastic inflammatory responses. This immune regulatory function is directed mainly toward T cells. However, MDSCs also regulate other cell populations, including B cells, during inflammatory responses.

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BAFF, a member of the TNF superfamily, has been recognized as a good target for autoimmune diseases. Belimumab, an anti-BAFF monoclonal antibody, was approved by the FDA for use in treating systemic lupus erythematosus. However, the molecular basis of BAFF neutralization by belimumab remains unclear.

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Article Synopsis
  • The binding of tumor necrosis factor α (TNFα) to its receptor triggers immune and inflammatory responses, and this process can be inhibited by anti-TNFα drugs like etanercept, infliximab, adalimumab, certolizumab-pegol, and golimumab.
  • These drugs are effective in treating autoimmune inflammatory diseases such as rheumatoid arthritis, Crohn's disease, and psoriatic arthritis by blocking TNFα from binding to its receptors.
  • The review highlights recent studies on the atomic-level interactions between TNFα and its antagonists, aiming to improve our understanding of how these drugs work and potentially lead to the development of more effective therapies.
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We present a light trapping structure consisting of gold and silver (AuAg) bimetallic non-alloyed nanoparticles (BNNPs) on a silicon dioxide (SiO2) spacer layer over crystalline silicon (c-Si) film, designed to improve the absorption of thin-film c-Si solar cells. Prior to fabrication of the AuAg BNNPs on the SiO2 spacer layer, numerical investigations were carried out using electromagnetic field simulation following the finite-difference time-domain method. The hemispherical Au8Ag8 BNNPs were fabricated and deposited on a 15 nm-thick SiO2 spacer layer, which enhanced light trapping in the c-Si film over a broad wavelength range (450-1100 nm).

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