Publications by authors named "Harishankar Manikantan"

Bacterial biofilm formation and attachment to hosts are mediated by carbohydrate-binding lectins, exopolysaccharides, and their interactions in the extracellular matrix (ECM). During tomato infection Ralstonia pseudosolanacearum (Rps) GMI1000 highly expresses three lectins: LecM, LecF, and LecX. The latter two are uncharacterized.

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Large gas bubbles can reach the surface of pools of mud and lava where they burst, often through the formation and expansion of circular holes. Bursting bubbles release volatiles and generate spatter, and hence play a key role in volcanic degassing and volcanic edifice construction. Here, we study the ascent and rupture of bubbles using a combination of field observations at Pâclele Mici (Romania), laboratory experiments with mud from the Imperial Valley (California, USA), numerical simulations and theoretical models.

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The complex dynamics of elastic fibers in viscous fluids are central to many biological and industrial systems. Fluid-structure interactions underlying these dynamics govern the shape and transport of flexible fibers, and understanding these interactions can help tune flow properties in applications such as microfluidic separation, printing and clogging. In this work, we use slender-body theory to study micromechanical dynamics that arise from the coupling between the elastic backbone of a fiber and the local straining flow that contributes to filament flipping and cross-streamline migration.

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The dynamics of many multiphase fluid systems involve the thinning and eventual break up of a slender fluid filament or a liquid jet. The interfacial instability that controls the rate of jet thinning depends on the relative magnitudes of capillary, viscous, and inertial stresses. Surfactants add an additional layer of physicochemical dynamics by reducing the surface tension of the interface and introducing reverse Marangoni flows in response to surface concentration gradients.

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Surfactants - molecules and particles that preferentially adsorb to fluid interfaces - play a ubiquitous role in the fluids of industry, of nature, and of life. Since most surfactants cannot be seen directly, their behavior must be inferred from their impact on observed flows, like the buoyant rise of a bubble, or the thickness of a coating film. In so doing, however, a difficulty arises: physically distinct surfactant processes can affect measurable flows in qualitatively identical ways, raising the specter of confusion or even misinterpretation.

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We study hydrodynamic interactions and clustering mechanisms of active membrane inclusions within lipid bilayers. Pairs of inclusions display unique oscillatory dynamics that disappear when the 3D fluid adjacent to the membrane is confined. We reduce the governing equations to a coupled dynamical system whose phase behavior reveals the striking role of bulk confinement in enhancing cluster formation within the membrane.

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The surface shear viscosity of an insoluble surfactant monolayer often depends strongly on its surface pressure. Here, we show that a particle moving within a bounded monolayer breaks the kinematic reversibility of low-Reynolds-number flows. The Lorentz reciprocal theorem allows such irreversibilities to be computed without solving the full nonlinear equations, giving the leading-order contribution of surface pressure-dependent surface viscosity.

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An analytical expression for the fluctuation-rounded stretch-coil transition of semiflexible polymers in extensional flows is derived. The competition between elasticity and tension is known to cause a buckling instability in filaments placed near hyperbolic stagnation points and the effect of thermal fluctuations on this transition has yet to receive full quantitative treatment. Motivated by the findings of recent experiments as well as our simulations, we solve for the amplitude of the first buckled mode near the onset of the instability.

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