Publications by authors named "Hanqing Ye"

Article Synopsis
  • SARS-CoV-2 continues to evolve despite vaccination efforts, making the development of affordable vaccines for the Omicron variant crucial.
  • A study tested a vaccine using a live Newcastle disease virus that expresses Omicron's spike protein in hamsters, administered either intranasally (IN) or intramuscularly (IM).
  • Results showed that the vaccine elicited strong antibody responses and provided complete protection against the Omicron BA.1 variant, suggesting it could be a viable nasal vaccination option against similar strains.
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West Nile virus (WNV), an arthropod-borne flavivirus, can cause severe symptoms, including encephalitis, and death, posing a threat to public health and the economy. However, there is still no approved treatment or vaccine available for humans. Here, we developed a novel vaccine platform based on a classical insect-specific flavivirus (cISF) YN15-283-02, which was derived from Culicoides.

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COVID-19 has become a global public health crisis since its outbreak in China in December 2019. Currently there are few clinically effective drugs to combat SARS-CoV-2 infection. The main protein (M), papain-like protease (PL) and RNA-dependent RNA polymerase (RdRp) of SARS-CoV-2 are involved in the viral replication, and might be prospective targets for anti-coronavirus drug development.

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With the explosive emergence of Zika virus (ZIKV) and the consequent devastating fetal malformations in infected expectant women, a safe and effective vaccine is urgently needed. Here, using our established NS1 trans-complementation system, we generated high titer of replication-defective ZIKV with NS1 deletion (ZIKV-ΔNS1) in the BHK-21 cell line stably expressing NS1 (BHK). NS1 deletion of ZIKV-ΔNS1 was stably maintained as no replicative virus was found in naïve BHK-21 cells after continuous passaging of ZIKV-ΔNS1 in BHK cells.

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Article Synopsis
  • Oncolytic viruses, like WNV-poly(A), selectively replicate in cancer cells and enhance the immune response, making them promising for cancer therapy.
  • WNV-poly(A) is a live attenuated vaccine that effectively targets multiple cancer types, kills tumor cells while sparing normal cells, and activates immune responses through dendritic cells and CD8+ T cells.
  • Experiments show that WNV-poly(A) significantly delays tumor progression in various cancer models, highlighting its potential as a new and effective treatment option for metastatic and recurrent tumors.
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Article Synopsis
  • The immunostained plaque assay uses specific antibodies to bind viral antigens, allowing for the detection of virus infectivity in cases where traditional staining methods fail.
  • This technique is particularly useful for titrating viruses like wild-type West Nile virus (WNV-WT) and a replication-defective variant (WNV-ΔNS1).
  • The method enhances the ability to quantify viral loads accurately, improving research on viruses that do not form typical plaques.
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COVID-19 caused by SARS-CoV-2 has posed a significant threat to global public health since its outbreak in late 2019. Although there are a few drugs approved for clinical treatment to combat SARS-CoV-2 infection currently, the severity of the ongoing global pandemic still urges the efforts to discover new antiviral compounds. As the viral spike (S) protein plays a key role in mediating virus entry, it becomes a potential target for the design of antiviral drugs against COVID-19.

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Article Synopsis
  • Researchers found that a new Chikungunya virus particle (ΔC-CHIKV) was infectious and potentially useful as a live vaccine, but its low production rate limited commercial development.
  • In the current study, they successfully propagated a chimeric version (VEEV-ΔC-CHIKV) in Vero cells, enhancing yield via adaptive mutations in the viral envelope proteins.
  • The modified viral particle showed promise as a safe and effective vaccine, providing protection to mice with just one immunization, which could lead to viable vaccine options against Chikungunya virus.
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The extremely high transmission rate of SARS-CoV-2 and severe cases of COVID-19 pose the two critical challenges in the battle against COVID-19. Increasing evidence has shown that the viral spike (S) protein-driven syncytia may be responsible for these two events. Intensive attention has thus been devoted to seeking S-guided syncytium inhibitors.

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Japanese encephalitis virus (JEV), an important neurotropic pathogen, belongs to the genus of the family and has caused huge threat to public health. It is still obscure regarding the functions of stem-loop (SL) and dumbbell (DB) domains of JEV 3' UTR in viral replication and virulence. In the current study, using the infectious clone of JEV SA14 strain as a backbone, we constructed a series of deletion mutants of 3' UTR to investigate their effects on virus replication.

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The lung is the prophylaxis target against SARS-CoV-2 infection, and neutralizing antibodies are a leading class of biological products against various infectious viral pathogen. In this study, we develop a safe and cost-effective platform to express neutralizing antibody in the lung with replicating mRNA basing on alphavirus replicon particle (VRP) delivery system, to prevent SARS-CoV-2 infections. First, a modified VEEV replicon with two subgenomic (sg) promoters was engineered to translate the light and heavy chains of antibody simultaneously, for expression and assembly of neutralizing anti-SARS-CoV-2 antibody CB6.

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Chikungunya virus (CHIKV) is a mosquito-borne alphavirus. As an emerging virus, CHIKV imposes a threat to public health. Currently, there are no vaccines or antivirals available for the prevention of CHIKV infection.

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The genus Flavivirus comprises numerous emerging and re-emerging arboviruses causing human illness. Vaccines are the best approach to prevent flavivirus diseases. But pathogen diversities are always one of the major hindrances for timely development of new vaccines when confronting unpredicted flavivirus outbreaks.

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The severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) virus, which is highly pathogenic and classified as a biosafety level 3 (BSL-3) agent, has greatly threatened global health and efficacious antivirals are urgently needed. The high requirement of facilities to manipulate the live virus has limited the development of antiviral study. Here, we constructed a reporter replicon of SARS-CoV-2, which can be handled in a BSL-2 laboratory.

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Article Synopsis
  • The NS1-complementation system shows promise for creating safe, one-dose flavivirus vaccines, as evidenced by the WNV-ΔNS1 study.
  • A new vaccine candidate, JEV-ΔNS1, was developed with high titer and demonstrated safety, genetic stability, and significant reduction in neuroinvasiveness and neurovirulence in animal tests.
  • JEV-ΔNS1 led to strong immune responses in mice against both JEV and West Nile virus, indicating its potential as an effective alternative vaccine.
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Japanese encephalitis virus (JEV), a major cause of Japanese encephalitisis, is an arbovirus that belongs to the genus Flavivirus of the family Flaviviridae. Currently, there is no effective drugs available for the treatment of JEV infection. Therefore, it is important to establish efficient antiviral screening system for the development of antiviral drugs.

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Each polymerase nucleotide addition cycle is associated with two primary conformational changes of the catalytic complex: the pre-chemistry active site closure and post-chemistry translocation. While active site closure is well interpreted by numerous crystallographic snapshots, translocation intermediates are rarely captured. Here we report three types of intermediate structures in an RNA-dependent RNA polymerase (RdRP).

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The emerging SARS-CoV-2 infection associated with the outbreak of viral pneumonia in China is ongoing worldwide. There are no approved antiviral therapies to treat this viral disease. Here we examined the antiviral abilities of three broad-spectrum antiviral compounds gemcitabine, lycorine and oxysophoridine against SARS-CoV-2 in cell culture.

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The flaviviruses pose serious threats to human health. Being a natural fusion of a methyltransferase (MTase) and an RNA-dependent RNA polymerase (RdRP), NS5 is the most conserved flavivirus protein and an important antiviral target. Previously reported NS5 structures represented by those from the Japanese encephalitis virus (JEV) and Dengue virus serotype 3 (DENV3) exhibit two apparently different global conformations, defining two sets of intra-molecular MTase-RdRP interactions.

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