Nanoscale-localized multiplexed biological activation of field effect transistors for biosensing applications.

The rise in antibiotic-resistant pathogens, highly infectious viruses, and chronic diseases has prompted the search for rapid and versatile medical tests that can be performed by the patient. Field-effect transistor (FET)-based electronic biosensing platforms are particularly attractive due to their sensitivity, fast turn-around time, potential for parallel detection of multiple pathogens, and compatibility with semiconductor manufacturing. However, an unmet critical need is a scalable, site-selective multiplexed biofunctionalization method with nanoscale precision for immobilizing different types of pathogen-specific bioreceptors on individual FETs, preventing parallel detection of multiple targets.

VOC source apportionment: How monitoring characteristics influence positive matrix factorization (PMF) solutions.

Positive matrix factorization (PMF) can be used to develop more targeted air quality mitigation strategies by identifying major sources of a pollutant in an area. This technique is dependent, however, on the ability of PMF to resolve factors that accurately represent all sources of that pollutant in an area. We investigated how the accuracy of PMF solutions might be influenced by monitoring data characteristics, such as temporal resolution, monitoring location, and species composition, to better inform the use of PMF in VOC mitigation strategies.

WindCline: Sloping wind tunnel for characterizing flame behavior under variable inclines and wind conditions.

Developing accurate computational models of wildfire dynamics is increasingly important due to the substantial and expanding negative impacts of wildfire events on human health, infrastructure, and the environment. Wildfire spread and emissions depend on a number of factors, including fuel type, environmental conditions (moisture, wind speed, etc.), and terrain/location.

Utilization of a Low-Cost Sensor Array for Mobile Methane Monitoring.

The use of low-cost sensors (LCSs) for the mobile monitoring of oil and gas emissions is an understudied application of low-cost air quality monitoring devices. To assess the efficacy of low-cost sensors as a screening tool for the mobile monitoring of fugitive methane emissions stemming from well sites in eastern Colorado, we colocated an array of low-cost sensors (XPOD) with a reference grade methane monitor (Aeris Ultra) on a mobile monitoring vehicle from 15 August through 27 September 2023. Fitting our low-cost sensor data with a bootstrap and aggregated random forest model, we found a high correlation between the reference and XPOD CH concentrations (r = 0.

Bent and Twisted: Synthesis of an Alkoxy-Substituted (1,5)Naphthalene-paracyclophanediene.

This contribution describes the synthesis of [2.2](1,5)naphthalenoparacyclophane-1,13-diene in four steps from 1,5-bis(bromomethyl)naphthalene and 1,4-benzenedimethanethiol. Consisting of 2,6-dioctyloxynaphthalene and benzene moieties, the effects of differing arene size on the structure, strain energy, and chemical reactivity of the cyclophanediene are examined.

Examining SRP pathway function in mRNA localization to the endoplasmic reticulum.

Signal recognition particle (SRP) pathway function in protein translocation across the endoplasmic reticulum (ER) is well established; its role in RNA localization to the ER remains, however, unclear. In current models, mRNAs undergo translation- and SRP-dependent trafficking to the ER, with ER localization mediated via interactions between SRP-bound translating ribosomes and the ER-resident SRP receptor (SR), a heterodimeric complex comprising SRA, the SRP-binding subunit, and SRB, an integral membrane ER protein. To study SRP pathway function in RNA localization, SR knockout (KO) mammalian cell lines were generated and the consequences of SR KO on steady-state and dynamic mRNA localization examined.

Rethinking Catalyst Trapping in Ni-Catalyzed Thieno[3,2-]thiophene Polymerization.

Catalyst-transfer polymerization (CTP) is a chain-growth method used to synthesize conjugated polymers. Although CTP works well for most donor-type monomers, the polymerization stalls with thieno[3,2-]thiophene when using Ni catalysts. Previous reports have rationalized this result by suggesting that the catalyst is trapped in a Ni -complex with the highly electron-rich arene.

ABL kinases regulate translation in HER2+ cells through Y-box-binding protein 1 to facilitate colonization of the brain.

Patients with human epidermal growth factor receptor 2-positive (HER2+/ERBB2) breast cancer often present with brain metastasis. HER2-targeted therapies have not been successful to treat brain metastases in part due to poor blood-brain barrier (BBB) penetrance and emergence of resistance. Here, we report that Abelson (ABL) kinase allosteric inhibitors improve overall survival and impair HER2+ brain metastatic outgrowth in vivo.

Health impacts of a randomized biomass cookstove intervention in northern Ghana.

Background: Household air pollution (HAP) from cooking with solid fuels has adverse health effects. REACCTING (Research on Emissions, Air quality, Climate, and Cooking Technologies in Northern Ghana) was a randomized cookstove intervention study that aimed to determine the effects of two types of "improved" biomass cookstoves on health using self-reported health symptoms and biomarkers of systemic inflammation from dried blood spots for female adult cooks and children, and anthropometric growth measures for children only.

Methods: Two hundred rural households were randomized into four different cookstove groups.

Characterizing methane and total non-methane hydrocarbon levels in Los Angeles communities with oil and gas facilities using air quality monitors.

Over the past decade, sensor networks have been proven valuable to assess air quality on highly localized scales. Here we leverage innovative sensors to characterize gaseous pollutants in a complex urban environment and evaluate differences in air quality in three different Los Angeles neighborhoods where oil and gas activity is present. We deployed monitors across urban neighborhoods in South Los Angles adjacent to oil and gas facilities with varying levels of production.

Photochemical Aging of Atmospheric Particulate Matter in the Aqueous Phase.

This study focused on the photoaging of atmospheric particulate matter smaller than 2.5 μm (PM) in the aqueous phase. PM was collected during a winter, a spring, and a summer campaign in urban and rural settings in Colorado and extracted into water.

Using to Identify Ni Bidentate Phosphine Complexes .

Identifying intermediates of Ni-containing reactions can be challenging due to the high reactivity of Ni complexes and their sensitivity toward air and moisture. Many Ni bidentate phosphine complexes are diamagnetic and can be analyzed via P NMR spectroscopy, but the oxidation state of Ni is difficult to determine using P chemical shift analysis alone. The -coupling between P atoms, , has been proposed to correlate with oxidation state, but few investigations have looked at how is affected by parameters such as length of the linker or identity of the phosphine or other ligands.

Using Gas-Phase Air Quality Sensors to Disentangle Potential Sources in a Los Angeles Neighborhood.

In the late summer of 2016, our team deployed a network of low-cost air quality sensing systems in partnership with community-based organizations in a neighborhood in South Los Angeles, California. Residents of this community were concerned about possible emissions from local oil and gas activity, however in addition to these potential emissions, the neighborhood is also subject to a complex mixture of pollutants from other nearby sources including major highways. For this deployment, metal-oxide VOC sensors were quantified to provide methane (CH) and total non-methane hydrocarbon (TNMHCs) concentration estimates.

Identifying the Barriers to Incorporating Reflective Practice into a Veterinary Curriculum.

A portfolio with good reflective content can play a large role in learning and setting up the lifelong learning practice required by veterinary surgeons in practice or in research. The aim of this project was to investigate students' experience with their reflective diaries within an electronic portfolio (e-portfolio). Focus groups were conducted with veterinary students at the University of Liverpool in years 1-4 to explore student perceptions of the e-portfolio, with an emphasis on reflection.

Deliberating Performance Targets: Follow-on workshop discussing PM, NO, CO, and SO air sensor targets.

The use of air sensor technology is increasing worldwide for a variety of applications, however, with significant variability in data quality. The United States Environmental Protection Agency held a workshop in July 2019 to deliberate possible performance targets for air sensors measuring particles with aerodynamic diameters of 10 μm or less (PM), nitrogen dioxide (NO), carbon monoxide (CO), and sulfur dioxide (SO). These performance targets were discussed from the perspective of non-regulatory applications and with the sensors operating primarily in a stationary mode in outdoor environments.

Quantitative Proteomics Links the LRRC59 Interactome to mRNA Translation on the ER Membrane.

Protein synthesis on the endoplasmic reticulum (ER) requires the dynamic coordination of numerous cellular components. Together, resident ER membrane proteins, cytoplasmic translation factors, and both integral membrane and cytosolic RNA-binding proteins operate in concert with membrane-associated ribosomes to facilitate ER-localized translation. Little is known, however, regarding the spatial organization of ER-localized translation.

The transcriptional repressor BCL11A promotes breast cancer metastasis.

The phenotypes of each breast cancer subtype are defined by their transcriptomes. However, the transcription factors that regulate differential patterns of gene expression that contribute to specific disease outcomes are not well understood. Here, using gene silencing and overexpression approaches, RNA-Seq, and splicing analysis, we report that the transcription factor B-cell leukemia/lymphoma 11A (BCL11A) is highly expressed in triple-negative breast cancer (TNBC) and drives metastatic disease.

Quantum Chemical Investigation of Dimerization in the Schlenk Equilibrium of Thiophene Grignard Reagents.

The Schlenk equilibrium of Grignard reagents describes the intricate relationships between monomers, aggregates, and exchange products. The core step of the Schlenk equilibrium, formally 2RMgX ⇌ RMg + MgX, has been subject to computational studies of simple methyl Grignards and NMR determination of thermodynamics. These studies neglect the effect the R group may have on the accessibility of intermediates in the Schlenk equilibrium.

Functionalized and Degradable Polyphthalaldehyde Derivatives.

Polymers that depolymerize back to monomers can be repeatedly chemically recycled, thereby reducing their environmental impact. Polyphthalaldehyde is a metastable polymer that can rapidly and quantitatively depolymerize due to its low ceiling temperature. However, the effect of substitution on the physical and chemical properties of polyphthalaldehyde derivatives has not been systematically studied.

Using A Low-Cost Sensor Array and Machine Learning Techniques to Detect Complex Pollutant Mixtures and Identify Likely Sources.

An array of low-cost sensors was assembled and tested in a chamber environment wherein several pollutant mixtures were generated. The four classes of sources that were simulated were mobile emissions, biomass burning, natural gas emissions, and gasoline vapors. A two-step regression and classification method was developed and applied to the sensor data from this array.

Mapping transcriptome-wide protein-RNA interactions to elucidate RNA regulatory programs.

Background: Our understanding of post-transcriptional gene regulation has increased exponentially with the development of robust methods to define protein-RNA interactions across the transcriptome. In this review, we highlight the evolution and successful applications of crosslinking and immunoprecipitation (CLIP) methods to interrogate protein-RNA interactions in a transcriptome-wide manner.

Results: Here, we survey the vast array of and approaches used to identify protein-RNA interactions, including but not limited to electrophoretic mobility shift assays, systematic evolution of ligands by exponential enrichment (SELEX), and RIP-seq.

Updated Emission Factors from Diffuse Combustion Sources in Sub-Saharan Africa and Their Effect on Regional Emission Estimates.

Diffuse emission sources outside of kitchen areas are poorly understood, and measurements of their emission factors (EFs) are sparse for regions of sub-Saharan Africa. Thirty-one in-field emission measurements were taken in northern Ghana from combustion sources common to rural regions worldwide. Sources sampled included commercial cooking, trash burning, kerosene lanterns, and diesel generators.

Deliberating performance targets workshop: Potential paths for emerging PM and O air sensor progress.

The United States Environmental Protection Agency held an international two-day workshop in June 2018 to deliberate possible performance targets for non-regulatory fine particulate matter (PM) and ozone (O) air sensors. The need for a workshop arose from the lack of any market-wide manufacturer requirement for Ozone documented sensor performance evaluations, the lack of any independent third party or government-based sensor performance certification program, and uncertainty among all users as to the general usability of air sensor data. A multi-sector subject matter expert panel was assembled to facilitate an open discussion on these issues with multiple stakeholders.

DAZL Regulates Germ Cell Survival through a Network of PolyA-Proximal mRNA Interactions.

The RNA binding protein DAZL is essential for gametogenesis, but its direct in vivo functions, RNA targets, and the molecular basis for germ cell loss in Dazl-null mice are unknown. Here, we mapped transcriptome-wide DAZL-RNA interactions in vivo, revealing DAZL binding to thousands of mRNAs via polyA-proximal 3' UTR interactions. In parallel, fluorescence-activated cell sorting and RNA-seq identified mRNAs sensitive to DAZL deletion in male germ cells.

Prices, peers, and perceptions (P3): study protocol for improved biomass cookstove project in northern Ghana.

Background: Despite their potential health and social benefits, adoption and use of improved cookstoves has been low throughout much of the world. Explanations for low adoption rates of these technologies include prices that are not affordable for the target populations, limited opportunities for households to learn about cookstoves through peers, and perceptions that these technologies are not appropriate for local cooking needs. The P3 project employs a novel experimental design to explore each of these factors and their interactive effects on cookstove demand, adoption, use and exposure outcomes.