Publications by authors named "Hanfei Xu"

Maintaining good surface water quality is essential for protecting ecosystems and human health. Henan Province has long faced challenges related to water scarcity and severe water pollution. To support effective management of water pollution in Henan Province and provide insights for regional water pollution management, we collected extensive water quality monitoring data and applied spatial autocorrelation along with random forest to analyze the sources of heavily polluted areas.

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Background: Lung function declines over the course of adulthood; however, a consensus on the normal range of decline in an individual's lung function is lacking.

Research Question: What is the normal range and the upper limit of normal (ULN) decline in lung function in adults without prior tobacco use, occupational dust exposure, or a known diagnosis or symptoms of cardiopulmonary disease?

Study Design And Methods: A retrospective analysis of healthy individuals who have never smoked (N = 1,305) from the Framingham Heart Study with repeated lung function meeting standards for acceptability and reproducibility was conducted. Longitudinal change was derived using a linear mixed effects model and estimated to a 6-year interval.

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  • * We found 17 genetic loci associated with sleep duration impacting lipid levels, with 10 of them being newly identified and linked to sleep-related disturbances in lipid metabolism.
  • * The research points to potential drug targets that could lead to new treatments for lipid-related issues in individuals with sleep problems, highlighting the connection between sleep patterns and cardiovascular health.
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Genome-wide association studies (GWAS) have identified numerous body mass index (BMI) loci. However, most underlying mechanisms from risk locus to BMI remain unknown. Leveraging omics data through integrative analyses could provide more comprehensive views of biological pathways on BMI.

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  • A study examined the link between body mass index (BMI) changes in middle adulthood and the risk of fractures in late adulthood, revealing that maintaining a stable BMI may lower fracture risks later in life.
  • The research analyzed data from 1,772 participants over 17 years, finding that those who moved from overweight to normal weight faced a significantly higher fracture risk after age 65 compared to those who remained in a normal to slightly overweight BMI range.
  • The findings suggest that maintaining a slight increase in weight during midlife could be beneficial for reducing fracture risk in later years, urging overweight individuals to avoid significant weight loss.
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Body mass index (BMI) is associated with chronic obstructive pulmonary disease (COPD) mortality, but the underlying mechanisms are unclear. The effect of genetic variants aggregated into a polygenic score may elucidate the causal mechanisms and predict risk. To examine the associations of genetically predicted BMI with all-cause and cause-specific mortality in COPD.

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Objective: This study aims to identify BMI-associated genes by integrating aggregated summary information from different omics data.

Methods: We conducted a meta-analysis to leverage information from a genome-wide association study (n = 339 224), a transcriptome-wide association study (n = 5619), and an epigenome-wide association study (n = 3743). We prioritized the significant genes with a machine learning-based method, netWAS, which borrows information from adipose tissue-specific interaction networks.

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  • Obesity poses a significant public health challenge and is linked to high mortality rates, with prior studies focusing mostly on European populations.
  • This research utilized whole-genome sequencing data from a diverse group of 88,873 individuals, finding 18 new signals associated with body mass index (BMI) and highlighting a novel SNP prevalent among people of African descent.
  • The study emphasizes the importance of diverse genetic data in identifying new obesity-related variants, moving us closer to personalized medical interventions for this crisis.
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In addition to rare genetic variants and the locus, common genetic variants contribute to idiopathic pulmonary fibrosis (IPF) risk. The predictive power of common variants outside the locus for IPF and interstitial lung abnormalities (ILAs) is unknown. We tested the predictive value of IPF polygenic risk scores (PRSs) with and without the region on IPF, ILA, and ILA progression.

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Inflammation contributes to lung function decline and the development of chronic obstructive pulmonary disease. Omega-3 fatty acids have antiinflammatory properties and may benefit lung health. To investigate associations of omega-3 fatty acids with lung function decline and incident airway obstruction in a diverse sample of adults from general-population cohorts.

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  • * The study involved 6,722 participants (including both predominantly White and African American cohorts) to identify proteins associated with lung function, using advanced proteomic methods and spirometry data.
  • * Findings revealed 254 proteins linked to lung function, with 15 proteins associated with the decline in lung function over time, highlighting significant biological pathways like immune response and matrix remodeling.
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Introduction: Observational studies have shown that body mass index (BMI) and waist-to-hip ratio (WHR) are both inversely associated with lung function, as assessed by forced vital capacity (FVC) and forced expiratory volume in 1 s (FEV1). However, observational data are susceptible to confounding and reverse causation.

Methods: We selected genetic instruments based on their relevant large-scale genome-wide association studies.

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Background: Adiposity amplifies the genetic risk of non-alcoholic fatty liver disease (NAFLD).

Aim: We evaluated the association between overweight-years, a cumulative exposure based on the product of the duration and severity of excess body weight (body mass index (BMI) ≥ 25 kg/m ), and genetic risk on liver fat and fibrosis.

Methods: This is a longitudinal analysis derived from a prospective cohort of adults in the Framingham Heart Study who underwent genotyping and vibration-controlled-transient-elastography with controlled attenuation parameter.

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  • A major study involving 580,869 participants identified 1,020 genetic signals linked to lung function impairment, which is crucial in understanding chronic obstructive pulmonary disease (COPD) and predicting mortality.
  • * The research found 559 genes related to lung function that were connected to 29 different biological pathways and demonstrated variations across ancestry, age, and smoking habits.
  • * Findings suggest potential new targets for therapy by highlighting specific genetic variants and proteins, ultimately contributing to better understanding and treatment of COPD.
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Rationale: Inflammation contributes to lung function decline and the development of chronic obstructive pulmonary disease. Omega-3 fatty acids have anti-inflammatory properties and may benefit lung health.

Objectives: Investigate associations of omega-3 fatty acids with lung function decline and incident airway obstruction in adults of diverse races/ethnicities from general population cohorts.

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Organic light-emitting diodes (OLEDs) suffer from carrier imbalance under high temperatures. We improved their thermal stability by using space interlayers adjacent to the charge transport layers. The current efficiency of the optimized OLEDs increased under high temperature, with an increase of over one order of magnitude of the electron mobility.

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  • This study looked at how body size and shape traits, like height and BMI, can be linked to genetics and health problems related to the heart and metabolism.! -
  • Scientists analyzed DNA from over 22,000 people to find genetic connections to these traits and discovered some specific genes that might affect height and BMI.! -
  • They found important results related to height but faced difficulties in identifying the effects of rare genetic variants, which are harder to study but still important for understanding genetics.!
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Background: Interstitial lung abnormalities (ILAs) are associated with increased mortality. It is unclear whether multimorbidity accounts for the mortality association or how strongly ILA is associated with mortality relative to other common age-associated diseases. We determined the association of ILA with all-cause mortality adjusted for multimorbidity, compared mortality associated with ILA and prevalent cardiovascular disease (CVD), diabetes mellitus, chronic kidney disease, chronic obstructive pulmonary disease and cancer and also determined the association between ILA and these diseases.

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Introduction: Bronchodilator response (BDR) is a measurement of acute bronchodilation in response to short-acting β2-agonists, with a heritability between 10 and 40%. Identifying genetic variants associated with BDR may lead to a better understanding of its complex pathophysiology.

Methods: We performed a genome-wide association study (GWAS) of BDR in six adult cohorts with participants of European ancestry (EA) and African ancestry (AA) including community cohorts and cohorts ascertained on the basis of obstructive pulmonary disease.

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Integrative analysis of multi-omics data has drawn much attention from the scientific community due to the technological advancements which have generated various omics data. Leveraging these multi-omics data potentially provides a more comprehensive view of the disease mechanism or biological processes. Integrative multi-omics clustering is an unsupervised integrative method specifically used to find coherent groups of samples or features by utilizing information across multi-omics data.

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Methylation integrates factors present at birth and modifiable across the lifespan that can influence pulmonary function. Studies are limited in scope and replication. To conduct large-scale epigenome-wide meta-analyses of blood DNA methylation and pulmonary function.

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Background: Genetic susceptibility may be associated with earlier onset of chronic obstructive pulmonary disease (COPD). We hypothesised that a polygenic risk score (PRS) for COPD would be associated with earlier age of diagnosis of COPD.

Methods: In 6647 non-Hispanic White (NHW) and 2464 African American (AA) participants from COPDGene, and 6812 participants from the Framingham Heart Study (FHS), we tested the relationship of the PRS and age of COPD diagnosis.

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  • Some individuals display characteristics of both asthma and COPD, leading to a condition known as asthma-COPD overlap, which yields worse health outcomes compared to having either condition alone.
  • The study aimed to explore the genetic factors behind asthma-COPD overlap and how these differ from those linked to asthma or COPD separately.
  • Researchers identified eight new genetic signals associated with asthma-COPD overlap, revealing a mix of genetic influences related to type 2 inflammation and potential long-term health impacts.
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  • Triple-negative breast cancer (TNBC) is a hard-to-treat type of breast cancer with a poor outlook, and there aren't many targeted treatments available.
  • Researchers found that a protein called DLST is linked to worse survival in TNBC patients and can help the cancer grow.
  • Reducing DLST in certain TNBC cells can kill them and help find new ways to treat this type of cancer using drugs that affect the energy cycle of the cells.
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