Publications by authors named "H M A Cavanagh"

bacteria have emerged as a promising source of structurally diverse natural products that are expected to play important ecological and industrial roles. This order ranks in the top three in terms of predicted natural product diversity from available genomes, warranting further genome sequencing efforts. However, a major hurdle in obtaining the predicted products is that biosynthetic genes are often 'silent' or poorly expressed.

View Article and Find Full Text PDF
Article Synopsis
  • The study investigates the diversity of Major Histocompatibility Complex class I (MHC-I) genes in dogs, using a new software tool called KPR assembler to analyze RNA-seq data from 1,325 dogs, revealing 97 known and 52 new alleles among the canine population.
  • Canine DLA-88 genes show genetic diversity comparable to human MHC-I genes, but breed-level diversity is lower than human ethnic group diversity. The research also identified breed-specific alleles and patterns of allele co-occurrence.
  • The analysis found significant overlap (80%) in hypervariable regions between human and canine MHC-I alleles, indicating key similarities that could enhance immunological studies
View Article and Find Full Text PDF

Bacterial natural products have found many important industrial applications. Yet traditional discovery pipelines often prioritize individual natural product families despite the presence of multiple natural product biosynthetic gene clusters in each bacterial genome. Systematic characterization of talented strains is a means to expand the known natural product space.

View Article and Find Full Text PDF

Two new lipopeptaibols, tolypocaibols A () and B (), and the mixed NRPS-polyketide-shikimate natural product maximiscin [(/)-)] were isolated from a sp. fungal endophyte of the marine alga . Analysis of NMR and mass spectrometry data revealed the amino acid sequences of the lipopeptaibols, which both comprise 11 residues with a valinol C-terminus and a decanoyl acyl chain at the N-terminus.

View Article and Find Full Text PDF