Segmentation aware probabilistic phenotyping of single-cell spatial protein expression data.

Spatial protein expression technologies can map cellular content and organization by simultaneously quantifying the expression of >40 proteins at subcellular resolution within intact tissue sections and cell lines. However, necessary image segmentation to single cells is challenging and error prone, easily confounding the interpretation of cellular phenotypes and cell clusters. To address these limitations, we present STARLING, a probabilistic machine learning model designed to quantify cell populations from spatial protein expression data while accounting for segmentation errors.

Identification and field testing of sex-attractant semiochemicals produced by male deer mice, .

Following previous reports that male deer mice, , produce chemical signals that attract conspecific females, we analysed and field-tested sex-attractant semiochemicals (message-bearing chemicals) of male deer mice. Field traps baited with urine- and faeces-soiled bedding of male mice captured adult female, but not male, mice, indicating dissemination of sex-attractant semiochemicals from the males' excreta. Analysing excreta headspace volatiles of both males and females by gas chromatography-mass spectrometry revealed that 5-methyl-2-hexanone was male-specific, and that eight other ketones (3-methyl-2-pentanone, 2-hexanone, 4-heptanone, 2-heptanone, 6-methyl-2-heptanone, 3-octanone, 2-octanone, 2-nonanone) were 2.

Heterozygous BTNL8 variants in individuals with multisystem inflammatory syndrome in children (MIS-C).

Multisystem inflammatory syndrome in children (MIS-C) is a rare condition following SARS-CoV-2 infection associated with intestinal manifestations. Genetic predisposition, including inborn errors of the OAS-RNAseL pathway, has been reported. We sequenced 154 MIS-C patients and utilized a novel statistical framework of gene burden analysis, "burdenMC," which identified an enrichment for rare predicted-deleterious variants in BTNL8 (OR = 4.

In-hospital outcomes of healthcare-associated COVID-19 (Omicron) versus healthcare-associated influenza: a retrospective, nationwide cohort study in Switzerland.

Background: As COVID-19 is integrated into existing infectious disease control programs, it is important to understand the comparative clinical impact of COVID-19 and other respiratory diseases.

Methods: We conducted a retrospective cohort study of patients with symptomatic healthcare-associated COVID-19 or influenza reported to the nationwide, hospital-based surveillance system in Switzerland. Included patients were adults (≥18 years) hospitalized for ≥3 days in tertiary care and large regional hospitals.