Comparative analysis of element and hormone content in zygotic embryos of Pinus elliottii and P. elliottii × P. caribaea.

Somatic embryogenesis is a crucial method for achieving clonal forestry in conifers. Understanding the development of zygotic embryos is essential not only for enhancing the efficiency and quality of somatic embryogenesis, but also for advancing forestry breeding programs. This study investigated dynamic changes of element and hormone contents during ZE development of Pinus elliottii and its hybrid P.

The relationships between tensile strength, mode I and mode II fracture toughness of rock: An empirical and microcracking perspective.

The empirical relationships between tensile strength, mode I and mode II fracture toughness obtained by previous studies have the problem of a small amount of data for fitting, and more data are needed for further study. There is a discrepancy between the theoretical prediction and the experimental results of the relationship between mode II and mode I fracture toughness. Because of this, a review is conducted to determine the relationships among tensile strength, mode I fracture toughness, and mode II fracture toughness from the data gathered from the available literature.

Genome-wide identification and characterization of the gene family in loblolly pine ( L.).

The loblolly pine ( L.) is one of the most profitable forest species worldwide owing to its quick growth, high wood yields, and strong adaptability. The gene family plays a widespread role in the physiological processes of plant defense responses and the biosynthesis of metabolites.

Decoding the specificity of mA RNA methylation and its implication in cancer therapy.

N6-methyladenosine (mA) is the most abundant endogenous modification in eukaryotic RNAs. It plays important roles in various biological processes and diseases, including cancers. More and more studies have revealed that the deposition of mA is specifically regulated in a context-dependent manner.

Experimental study on failure characteristics and rheological properties of pillar-like rock samples with different shapes.

The stability of coal pillar is extremely important to the control of rock strata movement and surface subsidence. It is of great significance for mining design to analyze the stability and failure characteristics of coal and rock pillars left after mining and to study the failure characteristics and rheological properties of coal and rock with different shapes. In this paper, based on uniaxial compression and rheological tests on rock samples, the rheological properties of rock samples with different shapes were discussed by using the nonlinear theoretical mechanics and damage theory, and the rheological mechanical characteristics of coarse yellow sandstone samples under the action of different free surface areas and the same loading contact area were investigated by means of experimental research, theoretical analysis and numerical simulation.

Green coal mining under buildings by overburden grout injection for coalmine sustainable development of central China.

Coal will occupy the main position in China's energy structure for a long time, and the negative externalities of its exploitation have a serious impact on the ground surface and its appurtenances. With the proposal of the dual carbon strategy, the coal-based energy determines that green and safe coal mining should be the priority direction of China's energy development. Taking Xinyi coalmine, which is mined in unstable coal seams with large mining depth, as the research area, the surface response characteristic and subsidence law under the different mining degrees were clarified.

Stiffness of gangue backfilling body in goaf and its influence mechanism on rock strata control and stress evolution in gangue backfill mining.

To study the influence mechanism of gangue backfilling material (GBM) with different particle sizes on overburden deformation, the particle movement characteristics and the mechanism of stiffness difference with different particle sizes of GBM were analysed by physical compression and particle flow numerical simulations. Then, combined with a similar material simulation method, the deformation characteristics of roof overburden and the evolution process of floor stress in backfill mining with backfilling bodies of different stiffness levels were studied. The results indicate that the subsidence decreased monotonously with a decrease in the particle size, and the stiffness of the GBM increased significantly under the same vertical load.

Plasma cell subtypes analyzed using artificial intelligence algorithm for predicting biochemical recurrence, immune escape potential, and immunotherapy response of prostate cancer.

Background: Plasma cells as an important component of immune microenvironment plays a crucial role in immune escape and are closely related to immune therapy response. However, its role for prostate cancer is rarely understood. In this study, we intend to investigate the value of a new plasma cell molecular subtype for predicting the biochemical recurrence, immune escape and immunotherapy response in prostate cancer.

Dynamic Landscapes of tRNA Transcriptomes and Translatomes in Diverse Mouse Tissues.

Although the function of tRNAs in the translational process is well established, it remains controversial whether tRNA abundance is tightly associated with translational efficiency (TE) in mammals. Moreover, how critically the expression of tRNAs contributes to the establishment of tissue-specific proteomes in mammals has not been well addressed. Here, we measured both tRNA expression using demethylase-tRNA sequencing (DM-tRNA-seq) and TE of mRNAs using ribosome-tagging sequencing (RiboTag-seq) in the brain, heart, and testis of mice.

Comprehensive signature analysis of drug metabolism differences in the White, Black and Asian prostate cancer patients.

The drug response sensitivity and related prognosis of prostate cancer varied from races, while the original mechanism remains rarely understood. In this study, the comprehensive signature including transcriptomics, epigenome and single nucleotide polymorphisms (SNPs) of 485 PCa cases- including 415 Whites, 58 Blacks and 12 Asians from the TCGA database were analyzed to investigate the drug metabolism differences between races. We found that Blacks and Whites had a more prominent drug metabolism, cytotoxic therapy resistance, and endocrine therapy resistance than Asians, while Whites were more prominent in drug metabolism, cytotoxic therapy resistance and endocrine therapy resistance than Blacks.

M2 subtype tumor associated macrophages (M2-TAMs) infiltration predicts poor response rate of immune checkpoint inhibitors treatment for prostate cancer.

Background: Prostate cancer (PCa) is poor response to the immunotherapy for its high heterogeneity of immune microenvironment. In this study, we aim to introduce a new immune subtype for PCa involving M2 tumour associated macrophages M2-TAMs).

Methods: Three hundred and sixty-two PCa patients and matched normal prostate tissues were selected from the Cancer Genome Atlas and Gene Expression Omnibus databases.

A Qualitative Transcriptional Signature for Predicting CpG Island Methylator Phenotype Status of the Right-Sided Colon Cancer.

A part of colorectal cancer which is characterized by simultaneous numerous hypermethylation CpG islands sites is defined as CpG island methylator phenotype (CIMP) status. Stage II and III CIMP-positive (CIMP+) right-sided colon cancer (RCC) patients have a better prognosis than CIMP-negative (CIMP-) RCC treated with surgery alone. However, there is no gold standard available in defining CIMP status.

Prediction Model Combining Clinical and MR Data for Diagnosis of Lymph Node Metastasis in Patients With Rectal Cancer.

Background: Determining the status of lymph node (LN) metastasis in rectal cancer patients preoperatively is crucial for the treatment option. However, the diagnostic accuracy of current imaging methods is low.

Purpose: To develop and test a model for predicting metastatic LNs of rectal cancer patients based on clinical data and MR images to improve the diagnosis of metastatic LNs.

A Qualitative Transcriptional Signature for Predicting Prognosis and Response to Bevacizumab in Metastatic Colorectal Cancer.

Bevacizumab is the molecular-targeted agent used for the antiangiogenic therapy of metastatic colorectal cancer. But some patients are resistant to bevacizumab, it needs an effective biomarker to predict the prognosis and responses of metastatic colorectal cancer (mCRC) to bevacizumab therapy. In this work, we developed a qualitative transcriptional signature to individually predict the response of bevacizumab in patients with mCRC.

Qualitative Ras pathway signature for cetuximab therapy reveals resistant mechanism in colorectal cancer.

Cetuximab therapy, which heavily relies on the activation of Ras pathway, has been used in KRAS, NRAS, BRAF, and PIK3CA wild-type colorectal cancer (CRC) (Ras-normal). However, the response rate only reached 60%, due to false-negative mutation detection and mutation-like transcriptome features in wild-type patients. Herein, by integrating RNA-seq, microarray, and mutation data, we developed a Ras pathway signature by characterizing KRAS/NRAS/BRAF/PIK3CA mutations to identify the hidden nonresponders from the Ras-normal patients by mutation detection.

An absolute human stemness index associated with oncogenic dedifferentiation.

The progression of cancer is accompanied by the acquisition of stemness features. Many stemness evaluation methods based on transcriptional profiles have been presented to reveal the relationship between stemness and cancer. However, instead of absolute stemness index values-the values with certain range-these methods gave the values without range, which makes them unable to intuitively evaluate the stemness.

An Exon Signature to Estimate the Tumor Mutational Burden of Right-sided Colon Cancer Patients.

The clinical applicability of the whole-exome sequencing (WES) in estimating tumor mutational burden (TMB) is currently limited by high cost, time-consuming and tissue availability. And given to the differences in the mutational landscapes among different types of cancer, we aimed to develop a cancer-specific signature to estimate TMB for right-sided colon cancer patients (RCC). Using WES data of 315 RCC patients, we identified the exons in which the number of mutational sites of the coding DNA sequences associated with TMB through linear regression analysis.

Predictive value of cadherin-11 for subsequent recurrence and progression in non-muscle invasive bladder cancer.

Background: Cadherin-11 (CDH11) is a type II cadherin and reported to function as an oncogene in various cancers. Our present study aims to investigate the role of CDH11 in bladder cancer (BCA).

Methods: Bioinformatics analysis was performed in four independent microarray data including 56 non-muscle-invasive bladder cancer (NMIBC) and 132 muscle-invasive bladder cancer (MIBC) tissues from Gene Expression Omnibus to screen out differentially expressed genes.

Correction: A qualitative transcriptional signature for determining the grade of colorectal adenocarcinoma.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Optimal Starting Age and Baseline Level for Repeat Tests: Economic Concerns of PSA Screening for Chinese Men - 10-Year Experience of a Single Center.

Objective: To investigate the optimal age for the baseline serum prostate-specific antigen (PSA) test and for repeat screening and its economic burden in a single center in China.

Materials And Methods: 35,533 men with PSA screening were retrospectively enrolled in this study. Follow-ups were conducted in 1,586 men with PSA >4 ng/mL, and receiver-operating characteristic (ROC) curves were employed to investigate the optimal cutoffs.

A qualitative transcriptional signature for predicting microsatellite instability status of right-sided Colon Cancer.

Background: Microsatellite instability (MSI) accounts for about 15% of colorectal cancer and is associated with prognosis. Today, MSI is usually detected by polymerase chain reaction amplification of specific microsatellite markers. However, the instability is identified by comparing the length of microsatellite repeats in tumor and normal samples.

A qualitative transcriptional signature for determining the grade of colorectal adenocarcinoma.

Histological grading (HG) is an important prognostic factor of colorectal adenocarcinoma (CRAC): the high-grade CRAC patients have poorer prognosis after tumor resection. Especially, the high-grade stage II CRAC patients are recommended to receive adjuvant chemotherapy. Due to the subjective nature of HG assessment, it is difficult to achieve consistency among pathologists, which brings patients uncertain grading outcomes and inappropriate treatments.

A comparative study of magnetic resonance imaging on the gray matter and resting-state function in prodromal and first-episode schizophrenia.

It is very difficult to predict the future development possibility of schizophrenia through the clinical symptoms of the high-risk cases. Therefore, how to determine the possibility of developing into schizophrenia individuals before the onset of the diseases are particularly important. The study investigated cerebral gray matter volume differences and resting-state functional connections among patients with psychosis risk syndrome (PRS), patients with first-episode schizophrenic (FES), and healthy controls (HC), aiming to provide scientific clinical evidence for schizophrenia early identification and intervention.

The analysis and application of granular backfill material to reduce surface subsidence in China's northwest coal mining area.

In China's northwest coal mining area, the excavation of shallow buried thick coal seams has caused serious damage to the phreatic water layer and induced deterioration of the ecological environment. Backfilling is a basic method of controlling the loss of groundwater and reducing surface subsidence. In order to reduce the porosity of the backfill material and control the compression ratio of the backfill body, the grain gradation of the local aeolian sand was studied based on the geological conditions of the shallow buried coal seam in the Yulin mining area, Shaanxi province.