Diffusion coefficients in mixtures of organic molecules and water are needed for many applications, ranging from the environmental modeling of pollutant transport, air quality, and climate, to improving the stability of foods, biomolecules, and pharmaceutical agents for longer use and storage. The Stokes-Einstein relation has been successful for predicting diffusion coefficients of large molecules in organic-water mixtures from viscosity, yet it routinely underpredicts, by orders of magnitude, the diffusion coefficients of small molecules in organic-water mixtures. Herein, a unified description of diffusion coefficients of large and small molecules in organic-water mixtures, based on the fractional Stokes-Einstein relation, is presented.
View Article and Find Full Text PDFHeterogeneous ice nucleation at solid surfaces is important in many physical systems including the Earth's atmosphere. AgI is one of the best ice nucleating agents known; however, why AgI is such an effective ice nucleus is unclear. Using molecular dynamics simulations, we show that a good lattice match between ice and a AgI surface is insufficient to predict the ice nucleation ability of the surface.
View Article and Find Full Text PDFWe employ molecular dynamics simulations and the reference interaction site model (RISM) integral equation theory to study the solvation structure and solvation thermodynamics of the transfer process from water to a water-urea mixture. Simple positive and negative ions together with uncharged species of the same size are used as crude models for the hydrophilic and hydrophobic groups of a protein. We find that urea preferentially solvates positively charged species.
View Article and Find Full Text PDFJ Am Chem Soc
April 2007
The structural and energetic properties of solutions containing water, urea, and trimethylamine-N-oxide (TMAO) are examined using molecular dynamics simulations. Such systems are of interest mainly because TMAO acts to counter the protein denaturing effect of urea. Even at relatively high concentration, TMAO is found to fit well into the urea-water structure.
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