Publications by authors named "Goubet A"

Secreted phosphosprotein 1 (SPP1) tumor-associated macrophages (TAM) are abundant tumor myeloid cells that are immunosuppressive, pro-tumorigenic, and have a highly negative prognostic factor. Despite this, there is a lack of efficient TAM-specific therapeutics capable of reducing SPP1 expression. Here, on a phenotypic screen is reported to identify small molecule SPP1 modulators in macrophages.

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Tumor-associated macrophages (TAM) are a diverse population of myeloid cells that are often abundant and immunosuppressive in human cancers. CXCL9 TAM has recently been described to have an antitumor phenotype and is linked to immune checkpoint response. Despite the emerging understanding of the unique antitumor TAM phenotype, there is a lack of TAM-specific therapeutics to exploit this new biological understanding.

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  • - The introduction of immune checkpoint blockers (ICBs) has significantly improved the treatment of advanced cancers in the urinary tract by enhancing the body's immune response against tumors.
  • - Immunogenic cancers, characterized by high mutation rates and specific immune cell infiltrates, respond better to immunotherapy, and ongoing research aims to identify effective tumor antigens and natural immune boosters.
  • - The presence of certain bacteria in the urinary tract can influence treatment outcomes and immune responses, suggesting that manipulating these bacteria could lead to improved cancer treatments when combined with ICBs.
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Microorganisms have been identified in tumor specimens for over a century. It is only in recent years that tumor-associated microbiota has become a rapidly expanding field. Assessment techniques encompass methods at the frontiers of molecular biology, microbiology, and histology, requiring a transdisciplinary process to carefully decipher this new component of the tumor microenvironment.

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  • Recent studies indicate that combining cancer immunotherapy drugs can improve survival rates for patients with advanced mesothelioma who respond to treatment.
  • A trial involving pembrolizumab and nintedanib revealed that patients resistant to these treatments had active immune responses, but also exhibited genetic alterations linked to inflammation and immune suppression in their tumors.
  • Findings suggest that understanding the specific tumor biology of mesothelioma could lead to more effective, tailored combination therapies for better patient outcomes.
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  • - Biomarkers are necessary to optimize the use of immune-checkpoint blockers (ICB) like pembrolizumab for patients with localized muscle-invasive bladder cancer (MIBC), as highlighted by the study on T cells and immune responses.
  • - The research identified follicular helper CD4+ T cells (TFH) and specific antibodies against E. coli as potential biomarkers that correlate with better clinical outcomes for patients receiving pembrolizumab treatment.
  • - Understanding the connections between tumor infections and immune responses can lead to improved therapeutic strategies and better patient management in the future.
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  • * Research revealed two patterns of immune response: one with reduced HLA-I expression linked to a suppressive tumor environment and poor prognosis, and another with preserved HLA-I that showed signs of effective immune activity and better outcomes.
  • * The study suggests that HLA-I expression at relapse is a result of immune subversion initiated by BCG, rather than just a consequence of immune editing, highlighting the importance of HLA-I testing for guiding treatment options.
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  • Prostate cancer typically progresses from hormone-sensitive forms to castration-resistant forms despite androgen deprivation therapy (ADT), prompting research into the role of T lymphocytes and gut microbiota in treatment effectiveness.
  • In mouse models, ADT improved thymic function and was less effective in mice lacking T lymphocytes or with depleted gut microbiota, showing connections between immune response and therapy outcomes.
  • Analysis of prostate cancer patients indicated that long-term ADT increased immune cell output and altered gut microbiota, with the potential for fecal transplants from healthy donors to improve treatment response, highlighting the need for addressing intestinal health in therapy.
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  • The study investigates how memory T cells respond to the SARS-CoV-2 virus and its variants, focusing on their link to protection against COVID-19 in healthy and cancer patients.
  • Findings suggest that an imbalance in immune responses, particularly between type 1 and type 2 cytokines, increases vulnerability to the virus, especially in individuals with specific deficiencies in T helper 1 (Th1) cells.
  • Current vaccines primarily trigger Th1 responses effectively against the original virus strain, highlighting the need for future vaccines to target T-cell responses against the receptor binding domain of new variants.
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  • Gut dysbiosis is linked to both intestinal and extraintestinal cancers; however, the relationship between cancer development and changes in the microbiome is still unclear.
  • The study found that cancer can cause damage to the ileal mucosa, leading to changes in gut permeability and a rise in Clostridium species, which are associated with dysbiosis.
  • Interventions like β-adrenergic receptor blockers or antibiotics helped prevent the detrimental gut changes linked to tumors, suggesting stress ileopathy is an important condition in cancer that needs targeted treatment.
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Cancer patients are particularly susceptible to the development of severe Covid-19, prompting us to investigate the serum metabolome of 204 cancer patients enrolled in the ONCOVID trial. We previously described that the immunosuppressive tryptophan/kynurenine metabolite anthranilic acid correlates with poor prognosis in non-cancer patients. In cancer patients, we observed an elevation of anthranilic acid at baseline (without Covid-19 diagnosis) and no further increase with mild or severe Covid-19.

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Patients with cancer are at higher risk of severe coronavirus infectious disease 2019 (COVID-19), but the mechanisms underlying virus-host interactions during cancer therapies remain elusive. When comparing nasopharyngeal swabs from cancer and noncancer patients for RT-qPCR cycle thresholds measuring acute respiratory syndrome coronavirus-2 (SARS-CoV-2) in 1063 patients (58% with cancer), we found that malignant disease favors the magnitude and duration of viral RNA shedding concomitant with prolonged serum elevations of type 1 IFN that anticorrelated with anti-RBD IgG antibodies. Cancer patients with a prolonged SARS-CoV-2 RNA detection exhibited the typical immunopathology of severe COVID-19 at the early phase of infection including circulation of immature neutrophils, depletion of nonconventional monocytes, and a general lymphopenia that, however, was accompanied by a rise in plasmablasts, activated follicular T-helper cells, and non-naive Granzyme BFasL, EomesTCF-1, PD-1CD8 Tc1 cells.

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A deviated repertoire of the gut microbiome predicts resistance to cancer immunotherapy. Enterococcus hirae compensated cancer-associated dysbiosis in various tumor models. However, the mechanisms by which E.

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  • * Analysis found significant changes in 77 metabolites (like amino acids and sugars) in critical COVID-19 patients compared to those with mild symptoms.
  • * Among moderately ill patients treated with tocilizumab, only 10 metabolites differed in those who improved versus those who worsened, with high levels of anthranilic acid linked to poor outcomes, suggesting potential therapeutic targets for treatment.
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  • Microbial electrodes were developed for wastewater treatment to alternately oxidize organic matter and reduce oxygen, achieving current densities of up to 6.4 Am without added substrates.
  • The introduction of nitrogen during anodic phases altered microbial populations, leading to a reduced ability for efficient oxygen reduction compared to electrodes in aerated conditions.
  • The electrodes exhibited a diverse mix of aerobic and anaerobic species in both internal and external biofilms, contributing to their effectiveness and stability in bioelectrochemical systems.
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  • Decision making in immuno-oncology relies on adapting therapies to the tumor microenvironment (TME), but predicting the optimal combination of treatments remains a challenge.
  • A new multiplex functional and dynamic immuno-assay was developed to assess how 43 human primary tumors respond to 12 different immunomodulators, including immune checkpoint inhibitors (ICI).
  • This “in sitro” assay shows promise in predicting which tumors might not respond to anti-PD-1 monoclonal antibodies and in identifying personalized treatment combinations, but further clinical trials are needed to confirm its efficacy.
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Limited experimental evidence bridges nutrition and cancer immunosurveillance. Here, we show that ketogenic diet (KD) - or its principal ketone body, 3-hydroxybutyrate (3HB), most specifically in intermittent scheduling - induced T cell-dependent tumor growth retardation of aggressive tumor models. In conditions in which anti-PD-1 alone or in combination with anti-CTLA-4 failed to reduce tumor growth in mice receiving a standard diet, KD, or oral supplementation of 3HB reestablished therapeutic responses.

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Over the past 16 years, three coronaviruses (CoVs), severe acute respiratory syndrome CoV (SARS-CoV) in 2002, Middle East respiratory syndrome CoV (MERS-CoV) in 2012 and 2015, and SARS-CoV-2 in 2020, have been causing severe and fatal human epidemics. The unpredictability of coronavirus disease-19 (COVID-19) poses a major burden on health care and economic systems across the world. This is caused by the paucity of in-depth knowledge of the risk factors for severe COVID-19, insufficient diagnostic tools for the detection of SARS-CoV-2, as well as the absence of specific and effective drug treatments.

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Accumulating evidence from preclinical studies and human trials demonstrated the crucial role of the gut microbiota in determining the effectiveness of anticancer therapeutics such as immunogenic chemotherapy or immune checkpoint blockade. In summary, it appears that a diverse intestinal microbiota supports therapeutic anticancer responses, while a dysbiotic microbiota composition that lacks immunostimulatory bacteria or contains overabundant immunosuppressive species causes treatment failure. In this review, we explore preclinical and translational studies highlighting how eubiotic and dysbiotic microbiota composition can affect progression-free survival in cancer patients.

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Intestinal microbiota have been proposed to induce commensal-specific memory T cells that cross-react with tumor-associated antigens. We identified major histocompatibility complex (MHC) class I-binding epitopes in the tail length tape measure protein (TMP) of a prophage found in the genome of the bacteriophage Mice bearing harboring this prophage mounted a TMP-specific H-2K-restricted CD8 T lymphocyte response upon immunotherapy with cyclophosphamide or anti-PD-1 antibodies. Administration of bacterial strains engineered to express the TMP epitope improved immunotherapy in mice.

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  • Blood myeloid cells show dysregulation in COVID-19, with changes in monocyte and neutrophil populations linked to disease severity.
  • In severe cases, there's a notable decrease in non-classical CD14CD16 monocytes and an accumulation of HLA-DR classical monocytes, along with high levels of calprotectin.
  • The findings suggest that measuring calprotectin levels and non-classical monocyte frequencies could help predict which COVID-19 patients are at higher risk for severe illness, indicating a need for further study.
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The Seine-Morée wastewater treatment plant (SM_WWTP), with a capacity of 100,000 population-equivalents, was fed with raw domestic wastewater during all of its start-up phase. Its microbiome resulted from the spontaneous evolution of wastewater-borne microorganisms. This rare opportunity allowed us to analyze the sequential microbiota colonization and implantation follow up during the start-up phase of this WWTP by means of regular sampling carried out over 8 months until the establishment of a stable and functional ecosystem.

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  • The study investigates how the composition of stool bacteria in kidney cancer patients affects the effectiveness of immune checkpoint blockade (ICB) therapy, specifically nivolumab, which has been shown to improve treatment outcomes in renal cell carcinoma (RCC).
  • Researchers collected fecal samples from 69 advanced RCC patients and analyzed these alongside samples from healthy volunteers to find correlations between gut bacteria and treatment responses, while also examining the impact of antibiotics and tyrosine kinase inhibitors on microbiota.
  • The findings suggest that recent antibiotic use significantly reduces response rates to ICB therapy, emphasizing the importance of gut bacteria in predicting patient outcomes and highlighting a potential area for improving cancer treatment strategies.
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