Analysis of the vibronic structure of the trans-stilbene fluorescence and excitation spectra: the S and S PES along the C[double bond, length as m-dash]C and C-C torsions.

We analyze the highly resolved vibronic structure of the low energy (≤200 cm) region of the fluorescence and fluorescence excitation spectra of trans-stilbene in supersonic beams. In this spectral region the vibronic structure is associated mainly with vibrational levels of the C-C torsion (τ) and the a combination of the two C-C bond twisting (ϕ). We base this analysis on the well-established S(τ, ϕ) two-dimensional potential energy surface (PES) and on a newly refined S(τ, ϕ) PES.

Excited state evolution of DNA stacked adenines resolved at the CASPT2//CASSCF/Amber level: from the bright to the excimer state and back.

Deactivation routes of bright ππ* (La) and excimer charge transfer (CT) states have been mapped for two stacked quantum mechanical (CASPT2//CASSCF) adenines inside a solvated DNA double strand decamer (poly(dA)·poly(dT)) described at the molecular mechanics level. Calculations show that one carbon (C2) puckering is a common relaxation coordinate for both the La and CT paths. By mapping the lowest crossing regions between La and CT states, together with the paths connecting the two states, we conclude that at least one CT state can be easily accessible.

Tracking the stilbene photoisomerization in the S(1) state using RASSCF.

In this work we compute the S1 potential energy curve responsible for stilbene cis-trans photoisomerisation employing the RASSCF approach, since the standard CASPT2//CASSCF protocol appears to be unsatisfactory in describing the stilbene S1 state. We find that RASSCF calculations, which are based on relatively few (but well chosen) configurations, produce qualitatively correct results and accurate relative excited state energies, both in the twisted and in the cis and trans regions of stilbene.

Product formation in rhodopsin by fast hydrogen motions.

The photochemical cis-trans isomerization of retinal in rhodopsin is investigated by structure sampling and excited state QM/MM trajectories with surface hopping. The calculations uncover the motions responsible for photoproduct formation and elucidate the reasons behind the efficient photoisomerization in the primary event of visual transduction.

Conical intersection dynamics of the primary photoisomerization event in vision.

Ever since the conversion of the 11-cis retinal chromophore to its all-trans form in rhodopsin was identified as the primary photochemical event in vision, experimentalists and theoreticians have tried to unravel the molecular details of this process. The high quantum yield of 0.65 (ref.

Adenine deactivation in DNA resolved at the CASPT2//CASSCF/ AMBER level.

We have employed hybrid CASPT2//CASSCF/AMBER calculations to map the (1)L(a)(1pipi*) deactivation path of a single quantum mechanical adenine in a d(A)(10).d(T)(10) double strand in water that is treated at the molecular mechanics level. We find that (a) the L(a) relaxation route is flatter in DNA than in vacuo and (b) the L(a) relaxation energy in DNA is much larger than the stabilization energy of the corresponding L(a) excimer.

Significance of a zwitterionic state for fulgide photochromism: implications for the design of mimics.

Modeling and mimicry: an advanced computational model for the photocyclization of a furyl fulgide showed that a stable charge-transfer excited state, S(1), and the corresponding conical intersection with the ground state are responsible for the efficient photochromism observed in this system. This finding provides a rationale for the de novo design of related derivatives with similar (or even increased) efficiency.

Deciphering low energy deactivation channels in adenine.

The radiationless decay paths of 9H-adenine in its lowest excited states (1)npi*, (1)L(b)((1)pipi*), and (1)L(a)((1)pipi*) and in dissociative (1)pisigma* states have been mapped in vacuo at the CASPT2//CASSCF resolution. The minimum energy path (MEP) of the (1)L(a) state, which shows the strongest absorption below 5 eV, is found to decrease monotonically along the puckering coordinate from the vertical excitation to a S(0)/(1)L(a) conical intersection (CI). The vertically excited (1)npi* and (1)L(b) states are found to relax to the respective minima and to require some energy to reach CIs with S(0).

Revealing excited state interactions by quantum-chemical modeling of vibronic activities: the R2PI spectrum of adenine.

We present a computational study encompassing quantum-chemical calculations of the ground and low-lying excited states of 9H-adenine and modeling of vibronic activities associated with the S(0) --> L(b) and S(0) --> n pi* transitions. Minima on the ground and excited states and the saddle point on the n pi* potential energy surface are determined with CASSCF calculations. Vibrational frequencies are computed at the same level of theory on ground and excited states while transition dipole moments and oscillator strengths are estimated, at the optimized geometries, with CASPT2//CASSCF calculations.

Deciphering intrinsic deactivation/isomerization routes in a phytochrome chromophore model.

High level ab initio correlated (CASPT2) computations have been used to elucidate the details of the photoinduced molecular motion and decay mechanisms of a realistic phytochrome chromophore model in vacuo and to explore the reasons underneath its photophysical/photochemical properties. Competitive deactivation routes emerge that unveil the primary photochemical event and the intrinsic photoisomerization ability of this system. The emerged in vacuo based static (i.

Resistive molecular memories: influence of molecular parameters on the electrical bistability.

The electrical bistability behavior of 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) along with two additional benzoquinone derivatives (TCQ and TCN) and pentacene (PNT) is investigated by computing intra- and intermolecular charge transfer parameters and by comparing the efficiency of bulk charge transport and charge injection at the electrode/organic interface in the presence of neutral and charged molecular species. The bulk charge transport is modeled assuming a charge hopping regime and by computing hopping rates and mobilities. Molecular dynamics simulations are carried out to estimate the effect of thermal disorder on charge transfer integrals.

Electrostatic control of the photoisomerization efficiency and optical properties in visual pigments: on the role of counterion quenching.

Hybrid QM(CASPT2//CASSCF/6-31G*)/MM(Amber) computations have been used to map the photoisomerization path of the retinal chromophore in Rhodopsin and explore the reasons behind the photoactivity efficiency and spectral control in the visual pigments. It is shown that while the electrostatic environment plays a central role in properly tuning the optical properties of the chromophore, it is also critical in biasing the ultrafast photochemical event: it controls the slope of the photoisomerization channel as well as the accessibility of the S(1)/S(0) crossing space triggering the ultrafast decay. The roles of the E113 counterion, the E181 residue, and the other amino acids of the protein pocket are explicitly analyzed: it appears that counterion quenching by the protein environment plays a key role in setting up the chromophore's optical properties and its photochemical efficiency.

Multistate photo-induced relaxation and photoisomerization ability of fumaramide threads: a computational and experimental study.

Fumaric and maleic amides are the photoactive units of an important and widely investigated class of photocontrollable rotaxanes as they trigger ring shuttling via a cis-trans photoisomerization. Here, ultrafast decay and photoinduced isomerization in isolated fumaramide and solvated nitrogen-substituted fumaramides (that are employed as threads in those rotaxanes) have been investigated by means of CASPT2//CASSCF computational and time-resolved spectroscopic techniques, respectively. A complex multistate network of competitive deactivation channels, involving both internal conversion and intersystem crossing (ISC) processes, has been detected and characterized that accounts for the picosecond decay and photochemical/photophysical properties observed in the singlet as well as triplet (photosensitized) photochemistry of fumaramides threads.

The different photoisomerization efficiency of azobenzene in the lowest n pi* and pi pi* singlets: the role of a phantom state.

Azobenzene E<==>Z photoisomerization, following excitation to the bright S(pi pi*) state, is investigated by means of ab initio CASSCF optimizations and perturbative CASPT2 corrections. Specifically, by elucidating the S(pi pi*) deactivation paths, we explain the mechanism responsible for azobenzene photoisomerization, the lower isomerization quantum yields observed for the S(pi pi*) excitation than for the S1(n pi*) excitation in the isolated molecule, and the recovery of the Kasha rule observed in sterically hindered azobenzenes. We find that a doubly excited state is a photoreaction intermediate that plays a very important role in the decay of the bright S(pi pi*).

Cyclohexenylphenyldiazene: a simple surrogate of the azobenzene photochromic unit.

We have carried out an experimental and computational study on the ground- and excited-state photochemical and photophysical properties of (1-cyclohexenyl)phenyldiazene (CPD), a species formally derived from azobenzene in which one of the phenyl rings is replaced by a 1-cyclohexene substituent. The results show that CPD does substantially behave like azobenzene, but with a higher (approximately 70%) Phi(Z-->E) (npi*) photoisomerization quantum yield, calling for CPD as an effective alternative of azobenzene itself with new functionalization possibilities. By use of state-of-the-art ab initio CASPT2//CASSCF minimum energy path computations, we have identified the most efficient decay and isomerization routes of the absorbing singlet (pipi*), S1 (npi*), T1, and S0 states of CPD.

Effect of strain on the photoisomerization and stability of a congested azobenzenophane: a combined experimental and computational study.

The stability and trans-cis photoisomerization properties of a macrocycle constituted of two para-aminoazobenzene units connected by two methylene bridges have been investigated by a combination of experimental and computational techniques. Irradiation at 365 nm leads to a photostationary state in which only 50% of the azobenzene units have isomerized, in contrast with the behavior of para-aminoazobenzene, whose photoconversion is larger than 80%. In the case of the macrocycle, a faster cis --> trans thermal back-reaction is observed.

Band structure of the four pentacene polymorphs and effect on the hole mobility at low temperature.

The band structure of the four known polymorphs of pentacene is computed from first principles using the accurate molecular orbitals of the isolated molecule as the basis for the calculation of the crystalline orbitals. The computed bands are remarkably different for each polymorph, but their diversity can be easily rationalized using a simple analytical model that employs only three parameters. The effect of the electronic structure on the hole mobility was evaluated using a simple model based on the constant relaxation time approximation.

Large amplitude out-of-plane vibrations of 1,3-benzodioxole in the S0 and S1 states: an analysis of fluorescence and excitation spectra by ab initio calculations.

We report the analytical expressions of the two-dimensional potential energy surfaces (PES) spanned by the puckering and flapping vibrations in the S0 and S1 states of 1,3-benzodioxole (BDO). Both PES are obtained from S0 and S1 energies computed on a grid of 2500 molecular geometries at the CASPT2 level. Both the S0 and S1 PES are anharmonic, and the planar geometry corresponds to a barrier that separates two minima at nonplanar geometries along the puckering/flapping deformations.

Charge-transport regime of crystalline organic semiconductors: diffusion limited by thermal off-diagonal electronic disorder.

We propose that the electron transport in crystalline organic semiconductors at room temperature (RT) is neither polaronic nor a combination of thermally activated hopping and polaronic transport, as previously thought. Thermal molecular motions cause large fluctuations in the intermolecular transfer integrals that, in turn, localize the charge carrier. This effect destroys the translational symmetry of the electronic Hamiltonian and makes the band description inadequate for RT organic crystals.

Dynamics of the intermolecular transfer integral in crystalline organic semiconductors.

In organic crystalline semiconductor molecular components are held together by very weak interactions and the transfer integrals between neighboring molecular orbitals are extremely sensitive to small nuclear displacements. We used a mixed quantum chemical and molecular dynamic methodology to assess the effect of nuclear dynamics on the modulation of the transfer integrals between close molecules. We have found that the fluctuations of the transfer integrals are of the same order of magnitude of their average value for pentacene and anthracene.

Solvent effects on the vibrational activity and photodynamics of the green fluorescent protein chromophore: a quantum-chemical study.

Vibrational activities in the Raman and resonance Raman spectra of the cationic, neutral, and anionic forms of 4'-hydroxybenzylidene-2,3-dimethyl-imidazolinone, a model compound for the green fluorescent protein chromophore, have been obtained from quantum-chemical calculations in vacuo and with the inclusion of solvent effects through the polarizable continuum model. It is found that inclusion of solvent effects improves slightly the agreement with experimental data for the cationic and neutral forms, whose spectra are qualitatively well-described already by calculations in vacuo. In contrast, inclusion of solvent effects is crucial to reproduce correctly the activities of the anionic form.

On the mechanism of the cis-trans isomerization in the lowest electronic states of azobenzene: S0, S1, and T1.

In this paper, we identify the most efficient decay and isomerization route of the S(1), T(1), and S(0) states of azobenzene. By use of quantum chemical methods, we have searched for the transition states (TS) on the S(1) potential energy surface and for the S(0)/S(1) conical intersections (CIs) that are closer to the minimum energy path on the S(1). We found only one TS, at 60 degrees of CNNC torsion from the E isomer, which requires an activation energy of only 2 kcal/mol.

Electronic states and transitions in C60 and C70 fullerenes.

A review of the most relevant aspects of fullerene electronic structure and spectroscopy is presented. Experimental data and their interpretation based on computational results are discussed both for fullerene C60 and C70, with particular attention to the properties of the isolated molecule. Concerning singlet state spectroscopy, it is shown that because of its high symmetry, only dipole-forbidden electronic states are found in the low excitation energy region of C60.