Publications by authors named "Gi Gyun Nam"

Article Synopsis
  • The updated EzBioCloud platform enhances the classification and identification of Bacteria and Archaea using advanced DNA sequencing technologies and a comprehensive taxonomic hierarchy based on 16S rRNA gene and genome sequences.
  • The new version includes a refined classification system that addresses underrepresented lineages and ensures high-quality data by implementing strict screening protocols for whole-genome assemblies from the NCBI Assembly Database.
  • EzBioCloud now features a total of 109,835 species, integrating methods like average nucleotide identity (ANI) and core gene ANI (cgANI) to improve taxonomic placements and accuracy.
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A Gram-staining-negative, aerobic, motile with a single polar flagellum and rod-shaped bacterium as a bacterial host of podovirus P26218, designated IMCC26218, was isolated from Lake Soyang, South Korea. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain IMCC26218 belonged to the genus of the family and shared 97.7-99.

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A bacterial strain, designated IMCC25901, was isolated from a freshwater lake, Soyang, in the Republic of Korea. The strain was Gram-stain-negative, aerobic, non-motile, orange-coloured and short rod-shaped. The 16S rRNA gene sequence analysis showed that strain IMCC25901 was most closely related to Flavobacterium yonginense HMD1001 (97.

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A Gram-stain-negative, pink-coloured, non-motile and gamma radiation-resistant bacterium, designated strain IMCC1711, was isolated from a freshwater sample collected from an artificial pond (Inkyong Pond). The 16S rRNA gene sequence analysis showed that strain IMCC1711 was most closely related to Deinococcus piscis 3ax (94.2 %) and formed a robust phylogenetic clade with other species of the genus Deinococcus.

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Two Gram-staining-negative, orange coloured, non-motile, rod-shaped bacterial strains, designated strains IMCC26013 and IMCC26026, were isolated from a freshwater sample collected from Lake Soyang in Korea. The 16S rRNA gene-based phylogenetic analyses showed that both strains belonged to the genus Flavobacterium and that strains IMCC26013 and IMCC26026 were most closely related to Flavobacterium psychrophilum (96.5 %) and Flavobacterium myungsuense (97.

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A bacterial strain, designated IMCC26223T, was isolated from an oligotrophic freshwater lake, Lake Soyang, Korea. Cells of strain IMCC26223T were Gram-staining negative, strictly aerobic, non-motile and short-rod-shaped. Growth occurred at pH 6-8 (optimum, pH 7.

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A Gram-stain-negative, non-motile, yellow-pigmented bacterium, designated strain IMCC27201T, was isolated from an artificial freshwater pond (Inkyong) in Korea. Growth of strain IMCC27201T occurred at 10-37 °C (optimum, 30 °C), at pH 7.0-8.

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A bacterial strain, designated IMCC1731T, was isolated from an eutrophic freshwater pond and characterized using a polyphasic taxonomic approach. Cellular growth occurred at pH 6-9 (optimum, pH 8.0), at 10-30 °C (optimum, 25 °C) and with 0-1 % (w/v) NaCl (optimum, 0 %).

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