Phylogenetic analysis of 17271 Indian SARS-CoV-2 genomes to identify temporal and spatial hotspot mutations.

The second wave of SARS-CoV-2 has hit India hard and though the vaccination drive has started, moderate number of COVID affected patients is still present in the country, thereby leading to the analysis of the evolving virus strains. In this regard, multiple sequence alignment of 17271 Indian SARS-CoV-2 sequences is performed using MAFFT followed by their phylogenetic analysis using Nextstrain. Subsequently, mutation points as SNPs are identified by Nextstrain.

The Blimp-1 transcription factor acts in non-neuronal cells to regulate terminal differentiation of the Drosophila eye.

The formation of a functional organ such as the eye requires specification of the correct cell types and their terminal differentiation into cells with the appropriate morphologies and functions. Here, we show that the zinc-finger transcription factor Blimp-1 acts in secondary and tertiary pigment cells in the Drosophila retina to promote the formation of a bi-convex corneal lens with normal refractive power, and in cone cells to enable complete extension of the photoreceptor rhabdomeres. Blimp-1 expression depends on the hormone ecdysone, and loss of ecdysone signaling causes similar differentiation defects.

Inhibitory effect of compounds extracted from (L.) Solms on SARS-CoV-2 main protease: An insight from molecular docking and MD-simulation studies.

Using molecular docking and other studies, 20 compounds extracted from (L.) Solms were screened, and their inhibitory efficiency examined against main protease (3CLpro) of SARS CoV-2. All the compounds were found to binding with 3CLpro through van der Waals and electrostatic forces of attractions.

Anti-enteric efficacy and mode of action of tridecanoic acid methyl ester isolated from Monochoria hastata (L.) Solms leaf.

Monochoria hastata (L.) Solms (family Pontederiaceae), an ethnomedicinal aquatic herb, is used to remedy several gastrointestinal diseases by various ethnic groups in India. The present study aimed to purify and characterize the antibacterial active ingredient against gastrointestinal (GI) diseases and its mode of action using in vitro experimental models.

Pseudomonas Aeruginosa Theft Biofilm Require Host Lipids of Cutaneous Wound.

Objective: This work addressing complexities in wound infection, seeks to test the reliance of bacterial pathogen Pseudomonas aeruginosa (PA) on host skin lipids to form biofilm with pathological consequences.

Background: PA biofilm causes wound chronicity. Both CDC as well as NIH recognizes biofilm infection as a threat leading to wound chronicity.

A review on evolution of emerging SARS-CoV-2 variants based on spike glycoprotein.

Since the inception of SARS-CoV-2 in December 2019, many variants have emerged over time. Some of these variants have resulted in transmissibility changes of the virus and may also have impact on diagnosis, therapeutics and even vaccines, thereby raising particular concerns in the scientific community. The variants which have mutations in Spike glycoprotein are the primary focus as it is the main target for neutralising antibodies.

Lower baseline autoantibody levels are associated with immune-related adverse events from immune checkpoint inhibition.

Introduction: Immune checkpoint inhibitors (ICI) are a novel cancer therapeutic that have been successful in treating advanced malignancies; however, they also cause immune-related adverse events (irAE). Given that some irAE are clinically similar to traditional autoimmune diseases, autoantibodies have been suggested as possible biomarkers of irAE. However, there are very little data on autoantibody investigation prior to ICI.

Myo-Inositol in Fermented Sugar Matrix Improves Human Macrophage Function.

Scope: Reactive oxygen species production by innate immune cells plays a central role in host defense against invading pathogens at wound-site. A weakened host-defense results in persistent infection leading to wound chronicity. Fermented Papaya Preparation (FPP), a complex sugar matrix, bolsters respiratory burst activity and improves wound healing outcomes in chronic wound patients.

Synergetic copper/zinc catalysis: synthesis of aryl/heteroaryl-fused 1-pyrrolo[3,2-]pyridines.

Scaffolds having a 1-pyrrolo[3,2-]pyridine core show significant biological activity. Herein, we report a synergetic copper/zinc-catalyzed one-step annulation reaction of 2-amino (hetero)arylnitriles with ynamide-derived buta-1,3-diynes to deliver 1-pyrrolo[3,2-]quinoline-2,4-diamine derivatives in moderate to good yields. The annulation reaction follows a double cyclization pathway.

Dietary risk factors for esophageal cancer based on World Health Organization regions.

Objectives: Esophageal cancer (EC) has become one of the most alarming cancers in the world. There are significant differences in incidence and risk factors associated with the two most common histological subtypes of EC, esophageal squamous cell carcinoma and esophageal adenocarcinoma, between regions. This systematic review was undertaken to analyze dietary risk factors specific to EC and its two subtypes based on World Health Organization regions.

Palindromic target site identification in SARS-CoV-2, MERS-CoV and SARS-CoV-1 by adopting CRISPR-Cas technique.

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) associated Cas protein (CRISPR-Cas) has turned out to be a very important tool for the rapid detection of viruses. This can be used for the identification of the target site in a virus by identifying a 3-6 nt length Protospacer Adjacent Motif (PAM) adjacent to the potential target site, thus motivating us to adopt CRISPR-Cas technique to identify SARS-CoV-2 as well as other members of Coronaviridae family. In this regard, we have developed a fast and effective method using k-mer technique in order to identify the PAM by scanning the whole genome of the respective virus.

Headgroup-Specific Interaction of Biological Lipid Monolayer/Water Interface with Perfluorinated Persistent Organic Pollutant (POP): As Observed with Interface-Selective Vibrational Spectroscopy.

Perfluoro compounds are widely used in various manufacturing processes, which leads to their bioaccumulation and subsequent adverse effects on human health. Using interface-selective vibrational spectroscopy (heterodyne-detected vibrational sum frequency generation (HD-VSFG)), we have elucidated the molecular mechanism of the perturbation of lipid monolayers on the water surface using a prototype perfluorinated persistent organic pollutant, perfluoroheptanoic acid (PFHA). PFHA disrupts the well-ordered all-trans conformation of a cationic lipid (1,2-dipalmitoyl-3-trimethylammonium propane (DPTAP)) monolayer and reduces the interfacial electric field at the lipid/water interface.

Hotspot Mutations in SARS-CoV-2.

Since its emergence in Wuhan, China, severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) has spread very rapidly around the world, resulting in a global pandemic. Though the vaccination process has started, the number of COVID-affected patients is still quite large. Hence, an analysis of hotspot mutations of the different evolving virus strains needs to be carried out.

Alterations in Multi-channel EEG Dynamics During a Stressful Shooting Task in Virtual Reality Systems.

This paper explores power spectrum-based features extracted from the 64-channel electroencephalogram (EEG) signals to analyze brain activity alterations during a virtual reality (VR)-based stressful shooting task, with low and high difficulty levels, from an initial resting baseline. This paper also investigates the variations in EEG across several experimental sessions performed over multiple days. Results indicate that patterns of changes in different power bands of the EEG are consistent with high mental stress levels during the shooting task compared to baseline.

A Lumped Parameter Model for Cardiac Output Estimation Using Arterial Blood Pressure Waveform.

This paper investigates a subject-specific lumped parameter cardiovascular model for estimating Cardiac Output (CO) using the radial Arterial Blood Pressure (ABP) waveform. The model integrates a simplified model of the left ventricle along with a linear third order model of the arterial tree and generates reasonably accurate ABP waveforms along with the Dicrotic Notch (DN). Non-linear least square optimization technique is used to obtain uncalibrated estimates of cardiovascular parameters.

Wavelet based event detection in the phonocardiogram of prolapsed mitral valve.

Mitral valve prolapse (MVP) is one of the cardiovascular valve abnormalities that occurs due to the stretching of mitral valve leaflets, which develops in around 2 percent of the population. MVP is usually detected via auscultation and diagnosed with an echocardiogram, which is an expensive procedure. The characteristic auscultatory finding in MVP is a mid-to-late systolic click which is usually followed by a high-pitched systolic murmur.

Economics and safety of continuous and interrupted suture hepaticojejunostomy: An audit of 556 surgeries.

Backgrounds/aims: Hepaticojejunostomy (HJ) for bilioenteric continuity is generally performed with interrupted sutures. This study compares the safety, economics, short- and long-term outcomes of continuous suture hepaticojejunostomy (CSHJ) and interrupted suture hepaticojejunostomy (ISHJ).

Methods: A retrospective cohort analysis involving all HJs between January 2014 and December 2018 was conducted.

Leveraging Network Science for Social Distancing to Curb Pandemic Spread.

COVID-19 has irreversibly upended the course of human life and compelled countries to invoke national emergencies and strict public guidelines. As the scientific community is in the early stages of rigorous clinical testing to come up with effective vaccination measures, the world is still heavily reliant on social distancing to curb the rapid spread and mortality rates. In this work, we present three optimization strategies to guide human mobility and restrict contact of susceptible and infective individuals.

An entropy-based study on mutational trajectory of SARS-CoV-2 in India.

The pandemic of COVID-19 has been haunting us for almost the past two years. Although, the vaccination drive is in full swing throughout the world, different mutations of the SARS-CoV-2 virus are making it very difficult to put an end to the pandemic. The second wave in India, one of the worst sufferers of this pandemic, can be mainly attributed to the Delta variant i.

Phase III, Randomized, Double-blind, Placebo controlled trial of Efficacy, Safety and Tolerability of Antiviral drug Umifenovir vs Standard care of therapy in non-severe COVID-19 patients.

Objective: To test efficacy, safety and tolerability of Umifenovir in non-severe COVID-19 adult patients.

Methods: We carried out randomized, double-blind, placebo-controlled, multicenter, phase III trials involving adult (18-75 years), non-severe COVID19 patients, randomized 1:1 on placebo or Umifenovir (800 mg BID, maximum 14 days) respectively along with standard-of-care. The primary endpoint for Asymptotic-mild patients was time to nasopharyngeal swab RT-PCR test negativity.

Inhibitory role of a smart nano-trifattyglyceride of root in epithelial ovarian cancer, through attenuation of FSHR - c-Myc axis.

Background And Aim: Epithelial ovarian cancer has the deadliest prognosis amongst gynaecological cancers, warranting an unmet need for newer drug targets. Based on its anticancer as well as abortifacient potential, Lam. root was hypothesized to have some implications in follicle stimulating hormone receptor (FSHR) dependent cancers like epithelial ovarian cancer.