Publications by authors named "Gerasimova S"

In barley having adherent hulls, an irreversible connection between the pericarp with both palea and lemma is formed during grain maturation. A mutation in the () gene prevents this connection and leads to the formation of barley with non-adherent hulls. A genetic model of two isogenic lines was used to elucidate the genetic mechanisms of hull adhesion: a doubled haploid line having adherent hulls and its derivative with non-adherent hulls obtained by targeted mutagenesis of the gene.

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Blue barley grain pigmentation results from anthocyanin accumulation in the aleurone layer. Anthocyanins are known for their beneficial effects on human health. The gene encoding the MYELOCYTOMATOSIS 2 (MYC2) transcription factor is potentially responsible for the blue coloration of the aleurone.

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Unlabelled: is to develop an experimental method to effectively assess the working memory in rats. The method uses a state-of-the-art controlled virtual environment with a virtual maze. The setup includes a treadmill for rodents, a fixation system, a dome for displaying virtual environment, and a control unit.

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In this manuscript, we investigate the memristor-based implementation of neuronal ion channels in a mathematical model and an experimental circuit for a neuronal oscillator. We used a FitzHugh-Nagumo equation system describing neuronal excitability. Non-linearities introduced by the voltage-gated ion channels were modeled using memristive devices.

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The epidermal leaf patterns of plants exhibit remarkable diversity in cell shapes, sizes, and arrangements, driven by environmental interactions that lead to significant adaptive changes even among closely related species. The Solanaceae family, known for its high diversity of adaptive epidermal structures, has traditionally been studied using qualitative phenotypic descriptions. To advance this, we developed a workflow combining multi-scale computer vision, image processing, and data analysis to extract digital descriptors for leaf epidermal cell morphology.

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genes () and () play a regulatory role in cuticle organization. Because the cuticle is a key evolutionary acquisition of plants for protection against environmental factors, a knockout (KO) of each gene may alter their ability to adapt to unfavorable conditions. A potential pleiotropic effect of or gene mutations can be assessed under salt stress.

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The recalcitrance exhibited by many maize () genotypes to traditional genetic transformation protocols poses a significant challenge to the large-scale application of genome editing (GE) in this major crop species. Although a few maize genotypes are widely used for genetic transformation, they prove unsuitable for agronomic tests in field trials or commercial applications. This challenge is exacerbated by the predominance of transformable maize lines adapted to temperate geographies, despite a considerable proportion of maize production occurring in the tropics.

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We present a novel closed-loop system designed to integrate biological and artificial neurons of the oscillatory type into a unified circuit. The system comprises an electronic circuit based on the FitzHugh-Nagumo model, which provides stimulation to living neurons in acute hippocampal mouse brain slices. The local field potentials generated by the living neurons trigger a transition in the FitzHugh-Nagumo circuit from an excitable state to an oscillatory mode, and in turn, the spikes produced by the electronic circuit synchronize with the living-neuron spikes.

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Article Synopsis
  • Plant surface properties are vital for coping with environmental stresses, and the cuticle's outer layer is made up of diverse waxes influenced by specific gene regulators.
  • In this study, researchers used a technique called RNA-guided Cas9 endonuclease to create mutations in four barley genes linked to cuticle properties, identifying one gene responsible for a glossy sheath phenotype due to a deficiency in β-diketones.
  • The results indicated that the WIN1 transcription factor plays a crucial role in regulating the biosynthesis of β-diketones in barley by activating certain genes during specific developmental stages and in particular plant organs.
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Unlabelled: is to assess the possibilities of predicting epileptiform activity using the neuronal activity data recorded from the hippocampus and medial entorhinal cortex of mice with chronic epileptiform activity. To reach this goal, a deep artificial neural network (ANN) has been developed and its implementation based on memristive devices has been demonstrated.

Materials And Methods: Young healthy outbred CD1 mice were used in our study.

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The genes and play a regulatory role in cuticle organization in barley. A knockout (KO) of each gene may alter plant mechanisms of adaptation to adverse environmental conditions. A putative pleiotropic effect of or gene mutations in barley can be assessed in a series of experiments in the presence or absence of a provoking factor.

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Ornithine aminotransferase (OAT) catalyzes transfer of the delta-amino group from L-ornithine to oxo-glutarate. In plants, this reaction biochemically connects urea cycle, proline cycle, and polyamine biosynthesis pathway. OAT activity is shown to be associated with biotic and abiotic stress responses and nitrogen metabolism, but its physiological role is still unclear.

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Systems of mutually coupled oscillators with delay coupling are of great interest for various applications in electronics, laser physics, biophysics, etc. Time delay usually originates from the finite speed of propagation of the coupling signal. In this paper, we present the results of detailed bifurcation analysis of two delay-coupled limit-cycle (Landau-Stuart) oscillators.

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We propose a memristive interface consisting of two FitzHugh-Nagumo electronic neurons connected via a metal-oxide (Au/Zr/ZrO(Y)/TiN/Ti) memristive synaptic device. We create a hardware-software complex based on a commercial data acquisition system, which records a signal generated by a presynaptic electronic neuron and transmits it to a postsynaptic neuron through the memristive device. We demonstrate, numerically and experimentally, complex dynamics, including chaos and different types of neural synchronization.

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Article Synopsis
  • Globodera rostochiensis is a significant potato pathogen that interacts with host plant roots, with commercial varieties relying on specific resistance genes (R genes) from wild relatives and Andean native potatoes.
  • Research on South American Solanum phureja accessions shows that resistant genotypes trigger an active stress response, including gene activation, tissue regeneration, and hypersensitive responses when attacked by G. rostochiensis.
  • The study highlights the importance of analyzing gene expression changes in S. phureja to understand resistance mechanisms and suggests that de novo transcriptome assembly can identify new resistance traits.
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  • The naked caryopsis trait in barley results from a loss-of-function mutation in the NUD gene, which is crucial for forming a cementing layer in the grain.
  • Researchers used RNA-guided Cas9 to effectively knock out the NUD gene, leading to a 57% conversion rate from hulled to naked barley in transformed plants.
  • The development of isogenic lines of hulled and naked barley offers an ideal model for studying the effects of NUD mutations on plant performance and yield, with naked barley having health benefits due to its high β-glucan content.
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Here we provide a perspective concept of neurohybrid memristive chip based on the combination of living neural networks cultivated in microfluidic/microelectrode system, metal-oxide memristive devices or arrays integrated with mixed-signal CMOS layer to control the analog memristive circuits, process the decoded information, and arrange a feedback stimulation of biological culture as parts of a bidirectional neurointerface. Our main focus is on the state-of-the-art approaches for cultivation and spatial ordering of the network of dissociated hippocampal neuron cells, fabrication of a large-scale cross-bar array of memristive devices tailored using device engineering, resistive state programming, or non-linear dynamics, as well as hardware implementation of spiking neural networks (SNNs) based on the arrays of memristive devices and integrated CMOS electronics. The concept represents an example of a brain-on-chip system belonging to a more general class of memristive neurohybrid systems for a new-generation robotics, artificial intelligence, and personalized medicine, discussed in the framework of the proposed roadmap for the next decade period.

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Many plant genomes display high levels of repetitive sequences. The assembly of these complex genomes using short high-throughput sequence reads is still a challenging task. Underestimation or disregard of repeat complexity in these datasets can easily misguide downstream analysis.

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We propose an optoelectronic system for stimulation of living neurons. The system consists of an electronic circuit based on the FitzHugh-Nagumo model, an optical fiber, and a photoelectrical converter. We used this system for electrical stimulation of hippocampal living neurons in acute hippocampal brain slices (350-μm thick) obtained from a 20-28 days old C57BL/6 mouse or a Wistar rat.

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Article Synopsis
  • * A study comparing the root transcriptomes of potato genotypes revealed differentially expressed genes related to resistance against a specific nematode, but limited annotations made it difficult to compile a clear list of candidate R genes.
  • * Integrating transcriptomic analysis with data on certain potato genes improved candidate gene identification, suggesting that this combined approach could expedite the discovery of potato R genes for further research and breeding efforts.
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Aim: To study a role of MTHFR mutations and their associations with the disturbances of basic parameters of the folate cycle in the development of ischemic stroke (IS).

Material And Methods: Fifty-one post-stroke patients, 26 women and 25 men, aged from 29 to 87 years, were included in the study. The control group consisted of 47 healthy people, 23 women and 24 men, aged from 30 to 83 years.

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Aim: To identify prognostic criteria of the restoration of movement in patients after acute disturbance of cerebral blood circulation.

Material And Methods: Results of clinical examination of 82 patients after the acute disturbance of blood circulation in the left hemisphere were analyzed in the Center for Speech Pathology and Neurorehabilitation. The degree of hemiparesis was compared with disease history data, results of electroencephalography, ultrasound and transcranial dopplerography, computed tomography and biochemical study.

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Cloning of the Arabidopsis thaliana genomic DNA fragment presumably corresponding to the promoter region of the ornithine-delta-aminotransferase (OAT) gene is reported. The reporter-gene construct, containing the Escherichia coli beta-glucouronidase gene under control of the OAT gene promoter was generated. The Nicotian tabacum SR1 transformants carrying this construct were obtained.

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The Medicago truncatula ornithine aminotransferase cDNA was cloned under the potent constitutive 35S RNA promoter of the cauliflower mosaic virus and transferred into the genome of tobacco Nicotiana tabacum SR1 plants. Transformed tobacco plants grew better in salinity stress, but did not differ in proline content under normal or stress conditions from control plants. It was assumed that the role of ornithine aminotransferase in the molecular mechanisms of stress resistance is not associated with additional proline synthesis.

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The rise of allergic diseases warrants an investigation of various environmental factors that are able to influence man negatively. By interacting with the human organism, bacteria and their decomposition products are well-known to stimulate different immunological reactions. The 24-month study has indicated that the total bacterial contamination of dust and the typical diversity of microbes depend on the season.

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