Cation-π interactions in competition with cation microhydration: a theoretical study of alkali metal cation-pyrene complexes.

Cation-π interactions were systematically investigated for the adsorption of H and alkali metal cations M to pyrene by means of Møller-Plesset perturbation theory (MP2) and density functional theory (DFT). The main aims were to determine the preferred adsorption sites and how the microhydration shell influences the adsorption process. The preferred adsorption sites were characterized in terms of structural parameters and energetic stability.

Vienna Soil-Organic-Matter Modeler--Generating condensed-phase models of humic substances.

Humic substances are ubiquitous in the environment and have manifold functions. While their composition is well known, information on the chemical structure and three-dimensional conformation is scarce. Here we describe the Vienna Soil-Organic-Matter Modeler, which is an online tool to generate condensed phase computer models of humic substances (http://somm.

Multi-class determination of anthelmintics in soil and water by LC-MS/MS.

The translocation of antiparasitic drugs from animal excrement through soil and water to crops and forages and their recycling to food-producing animals is a potential concern with respect to the contamination of the food chain. To facilitate the investigation of this problem, an LC-MS/MS method for selected anthelmintics in soil and water was developed. The soil sample preparation involved a simple solvent extraction and dispersive clean-up technique.

C-labeled organic amendments: Characterization in different particle size fractions and humic acids in a long-term field experiment.

Knowledge about the stabilization of organic matter input to soil is essential for understanding the influence of different agricultural practices on turnover characteristics in agricultural soil systems. In this study, soil samples from a long-term field experiment were separated into silt- and clay-sized particles. In 1967, C labeled farmyard manure was applied to three different cropping systems: crop rotation, monoculture and permanent bare fallow.

The stability of the acetic acid dimer in microhydrated environments and in aqueous solution.

The thermodynamic stability of the acetic acid dimer conformers in microhydrated environments and in aqueous solution was studied by means of molecular dynamics simulations using the density functional based tight binding (DFTB) method. To confirm the reliability of this method for the system studied, density functional theory (DFT) and second order Møller-Plesset perturbation theory (MP2) calculations were performed for comparison. Classical optimized potentials for liquid simulations (OPLS) force field dynamics was used as well.

Differences in sorption behavior of the herbicide 4-chloro-2-methylphenoxyacetic acid on artificial soils as a function of soil pre-aging.

Purpose: The sorption behavior of the herbicide 4-chloro-2-methylphenoxyacetic acid (MCPA) to three different artificial soil mixtures was investigated. Artificial soils serve as model systems for improving understanding of sorption phenomena.

Materials And Methods: The soils consisted of quartz, ferrihydrite, illite, montmorillonite, and charcoal.

Molecular dynamics simulations of water molecule-bridges in polar domains of humic acids.

The stabilizing effect of water molecule bridges on polar regions in humic substances (HSs) has been investigated by means of molecular dynamics (MD) simulations. The purpose of these investigations was to show the effect of water molecular bridges (WAMB) for cross-linking distant locations of hydrophilic groups. For this purpose, a tetramer of undecanoid fatty acids connected to a network of water molecules has been constructed, which serve as a model for spatially fixed aliphatic chains in HSs terminated by a polar (carboxyl) group.

Thermodynamic stability of hydrogen-bonded systems in polar and nonpolar environments.

The thermodynamic properties of a selected set of benchmark hydrogen-bonded systems (acetic acid dimer and the complexes of acetic acid with acetamide and methanol) was studied with the goal of obtaining detailed information on solvent effects on the hydrogen-bonded interactions using water, chloroform, and n-heptane as representatives for a wide range in the dielectric constant. Solvent effects were investigated using both explicit and implicit solvation models. For the explicit description of the solvent, molecular dynamics and Monte Carlo simulations in the isothermal-isobaric (NpT) ensemble combined with the free energy perturbation technique were performed to determine solvation free energies.

Model study on sorption of polycyclic aromatic hydrocarbons to goethite.

A systematic DFT study of interactions between a set of mono- and polyaromatic hydrocarbons (PAHs) and the (110) goethite surface have been performed in this work. It was found that PAHs form relatively weak surface complexes having their molecular plane practically parallel to the surface plane. The origin of the interactions is in the polarization of the pi-system by polar OH groups and in the formation of weak hydrogen bonds where the pi-system acts as a proton acceptor.

Impact of different tillage practices on molecular characteristics of humic acids in a long-term field experiment - an application of three different spectroscopic methods.

The present paper describes changes in soil organic carbon (SOC) and extractable humic acids (HAs) in a long-term field experiment with different tillage treatments (minimum tillage (MT), reduced tillage (RT) and conventional tillage (CT)). This field experiment is located in the east of Vienna in a Pannonian climate and it was started in 1988. The methodological approach included elemental analyses, FT-IR, 13C NMR and fluorimetric measurements.

Zwitterionic oligonucleotides: a study on binding properties of 2'-O-aminohexyl modifications.

2'-O-Aminohexyl side chains provide excellent conditions for zwitterionic interstrand and intrastrand interactions of oligonucleotides. 2'-O-Aminoalkylated phosphoramidites of adenosine and uridine were synthesized and incorporated in increasing number into homo adenosine and homo uridine/thymidine dodecamers, respectively. CD spectra of these dodecamers with complementary sense DNA exhibited a B-DNA type structure.

Sorption of naphthalene derivatives to soils from a long-term field experiment.

The influence of long-term farming practices on the soil's behaviour to adsorb hydrophobic organic compounds (HOCs) over long times was investigated. Adsorption of five naphthalene derivatives (naphthalene, 1-naphthol, 1-naphthylamine, 1-hydroxy-2-naphthoic acid, 1,4-naphthoquinone) was examined on soils with varying amounts and origins of soil organic matter obtained after amendment with different organic materials over more than 40 years. Soil organic matter, pore sizes and aggregate stability were significantly altered influencing the adsorption behaviour of the soils.

Application of multielement stable isotope ratio analysis to the characterization of French, italian, and spanish cheeses.

The stable isotope ratios (delta13C, delta15N, and delta34S of casein and delta13C and delta18O of glycerol) measured by IRMS of French, Italian, and Spanish cheeses are presented and discussed. Variability factors such as animal-feeding regimen, geographical origin, and climatic and seasonal conditions were studied to check the possibilities of cheese characterization offered by each isotopic parameter. Delta13C values of both casein and glycerol appeared to be strongly correlated to the amount of maize in the animal diet.

Adsorption of organic substances on broken clay surfaces: a quantum chemical study.

Hydrogen-bonded interactions between local defect structures on broken clay surfaces modeled as molecular clusters and the organic molecules acetic acid, acetate, and N-methylacetamide (NMA) have been investigated. Density functional theory and polarized basis sets have been used for the computation of optimized interaction complexes and formation energies. The activity of the defect structures has been characterized as physical or chemical in terms of the strength of the hydrogen bonds formed.

Investigations of nitrogen fluxes and pools on a limestone site in the Alps.

In the North Tyrolean Limestone Alps a site was investigated over a four-year period (1998-2001) in order to assess the nitrogen saturation status, the nitrogen budget (quantification of the net uptake of nitrogen by the canopy and of the nitrogen mineralization, nitrogen uptake from roots and N2O emission rates, proof of the origin of nitrate in the soil water with stable isotope analyses), and the effects of the actual nitrogen input on ground water quality. The main goals were to quantify the nitrogen input rate, the nitrogen pools in above-ground and below-ground compartments, nitrogen turnover processes in the soil as well as the output into the groundwater and into the atmosphere. The findings are based on continuous and discontinuous field measurements as well as on model results.

Nitrate dynamics in an Alpine forest site (Mühleggerköpfl). O and N stable isotope analysis in natural water samples.

Stable isotope analysis of 15N/14N and 18O/16O-nitrate was used to investigate the nitrate dynamics and potential groundwater pollution in an Alpine forest stand in Tyrol/Austria. The dynamics of delta15-N(nitrate) values were followed in a forest ecosystem. The stable isotopic values of the throughfall are comparable with other studies.

Influence of dissolved humic substances on the leaching of MCPA in a soil column experiment.

The influence of dissolved humic substances on the transport of (4-chloro-2-methylphenoxy) acetic acid (MCPA) in a sandy soil with a low organic carbon content was studied in a column experiment. Soil columns were eluted with aqueous solutions containing different fractions of humic substances. More than 70% of the applied compound was found in the leachate in all sandy soil experiments, but distinct differences were obtained depending on the composition of the eluent.