Publications by authors named "Ge-Yi Fu"

Article Synopsis
  • A new facultatively anaerobic, Gram-negative bacterium named Z1-6 was discovered in tidal flat sediment from Zhoushan, China, characterized by its curved rod shape and varying growth conditions (optimal at 28-32°C, pH 7.0-7.5, and 1-2% NaCl).
  • The strain has specific fatty acids and MK-7 as its main respiratory quinone, and its genomic analysis reveals a G+C content of 39.2% and a genome size of 6.4 Mb.
  • Phylogenetic studies show that Z1-6 is closely related to the genus Draconibacterium but forms a distinct branch, leading to its classification
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Two Gram-negative, non-spore-forming, non-motile, non-flagellated bacteria, designated strains D6 and DH64, were isolated from surface water of the Pacific Ocean. For strain D6, growth occurred at 10-40 °C, pH 5.5-9.

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Two Gram-stain-negative, rod-shaped and non-motile strains, designated as DY56-A-20 and G39, were isolated from deep-sea sediment of the Pacific Ocean and deep-sea seawater of the Indian Ocean, respectively. Strain DY56-A-20 was found to grow at 15-37 °C (optimum, 28 °C), at pH 6.0-10.

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Article Synopsis
  • Chemoautotrophic microorganisms in the dark ocean significantly contribute to carbon fixation and the global carbon cycle, showcasing a diverse range of pathways compared to those in well-lit marine areas.
  • The study analyzed deep-sea sediment samples from hydrothermal vents in the southwestern Indian Ocean using metagenomic techniques, revealing the presence of various carbon-fixing pathways, including the reductive tricarboxylic acid and Calvin cycles.
  • The research identified microbial populations, particularly from the Pseudomonadota and Desulfobacterota phyla, linked to these pathways, enhancing our understanding of biogeochemical processes in deep-sea ecosystems and paving the way for further studies on carbon fixation in these environments.
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A Gram-stain-negative, non-motile, rod-shaped bacterial strain, designated C281, was isolated from seawater sampled at the Marshallese seamount chain. Results of 16S rRNA gene analysis revealed that strain C281 was most closely related to CZ-AZ5 with 92.7 % sequence similarity.

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A Gram-staining-negative, non-motile, strictly aerobic bacterium, designated as strain TT11, was isolated from a sediment sample of a tidal flat connected in Zhoushan, China. Cells of strain TT11 are spherical, halotolerant, catalase- and oxidase-positive, and produce carotenoid-like pigments. Colonies were 0.

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Emcibacter congregatus ZYL was isolated from a sediment sample cultured in situ in a coast located in the East China Sea. The genome of E. congregatus ZYL was sequenced and assembled into one single circular chromosome with the size of 4,189,011 bp and G+C content of 52.

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A Gram-stain-negative, motile, aerobic, rod-shaped bacterium with flagella, designated ZX-21, was isolated from surface seawater of the East Sea in Zhoushan, China. Growth of strain ZX-21T was observed at 10--35  o°C (optimum, 30 °C), at pH 6.0-8.

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A novel Gram-stain-negative, motile, rod-shaped (0.4-0.5×1.

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A Gram-negative, aerobic, motile, rod-shaped, pale-yellow bacterial strain, designated as ZYL, isolated from a cultured in situ sediment sample collected from the East China Sea coast, was studied using a polyphasic taxonomic approach. Strain ZYL grew at 4-30 °C (optimum, 25 °C), at pH 6.0-8.

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A Gram-stain-negative, aerobic, ovoid or short rod-shaped bacterium with prosthecates and flagella, designated SY-3-19, was isolated from the surface seawater of the South China Sea, and subjected to a polyphasic taxonomic study. The isolate grew at 4-40 °C and pH 5.0-9.

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A gram-stain-negative, aerobic, ovoid or short rod-shaped, and non-motile strain, designed G7 was isolated from a tidal flat sample collected from the coast of East Sea in Zhoushan, China. Strain G7 grew at 4-40 °C and pH 6.0-9.

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A Gram-staining-negative, aerobic, non-spore-forming, coccoid to rod shaped bacteria with prosthecate and flagellum, designated as HSF6, was isolated from deep seawater samples collected from the South China Sea at depth of 2.5 km and subjected to a polyphasic taxonomic investigation. Colonies of strain HSF6 were 1-2 mm in diameter, smooth, circular, convex and yellow.

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A novel Gram-staining-negative, oval-shaped (0.4-0.6×0.

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A Gram-stain-negative, aerobic, non-spore-forming, non-motile, oval to rod-shaped, prosthecate bacterium, designated strain WM6T, was isolated from a seawater sample collected from the South China Sea at a depth of 150 m and subjected to a polyphasic taxonomic investigation. Cells of strain WM6T were approximately 0.5-0.

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A Gram-stain-negative, facultatively anaerobic, motile and rod-shaped strain, designed H2T, was isolated from the Western Pacific Ocean, and subjected to a taxonomic investigation using a polyphasic approach. Strain H2T grew at 15-40 °C and pH 6.0-9.

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A Gram-stain-negative, facultatively anaerobic bacterium, designated WM3T, was isolated from surface seawater collected from the East China Sea. Cells were catalase- and oxidase-positive, short rods and motile by means of a single polar flagellum. Growth occurred at 15-43 °C (optimum 37-40 C), pH 5.

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The members of the phylum Bacteroidetes are recognized as some of the most important specialists for the degradation of polysaccharides. However, in contrast to research on Bacteroidetes in the human gut, research on polysaccharide degradation by marine Bacteroidetes is still rare. The genus Algibacter belongs to the Flavobacteriaceae family of the Bacteroidetes, and most species in this genus are isolated from or near the habitat of algae, indicating a preference for the complex polysaccharides of algae.

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In this study, a pyruvate carboxylase gene (PYC1) from a marine fungus Penicillium rubens I607 was cloned and characterized. ORF of the gene (accession number: KM397349.1) had 3534 bp encoding 1177 amino acids with a molecular weight of 127.

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In the present study, after the exo-inulinase gene INU1 from Meyerozyma guilliermondii was optimized according to the codon usage bias of Saccharomyces cerevisiae, both the optimized gene INU1Y and the native gene INU1 were ligated into the homologous integration expression vector pMIRSC11 and expressed in Saccharomyces sp. W0. It was determined that the inulinase activity of the recombinant yeast Y13 with the optimized gene INU1Y was 43.

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