Publications by authors named "Galib Mirza"

Various coronary artery anomalies have been identified in modern literature with most being benign in nature. Generally, these anomalous vessels are clinically silent due to their non-obstructive or benign course. It is vital to identify patients with malignant courses of these vessels as their initial presenting symptom might be sudden cardiac death.

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  • Neuromorphic computing offers faster and more energy-efficient AI computations than traditional digital computers, but currently lacks accuracy compared to software-based AI.
  • The study focuses on enhancing accuracy by managing the randomness of memristive devices, which mimic brain synapses, through controlled conduction channel formation via electrode design.
  • Using techniques like X-ray imaging and molecular dynamics simulations, researchers demonstrate that careful electrode design can achieve a consistent distribution of oxygen vacancies, leading to improved memristive device performance in neuromorphic computing.
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The solvation structure of transition metal ions is important for applications in geochemistry, biochemistry, energy storage, and environmental chemistry. We study the X-ray absorption pre-edge and near-edge spectra at the K-edge of a nearly complete series of hydrated first-row transition metal ions with d orbital occupancy from d to d. We optimize all of the structures at the density functional theory (DFT) level with explicit solvation and then compute the pre-edge X-ray absorption spectra with time-dependent DFT (TDDFT) and restricted active space second-order perturbation theory (RASPT2).

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Linkage isomers are coordination compounds with the same composition but different donor atoms, resulting in distinct physical and electronic structures. A pair of linkage isomers, and , derived from phenylglyoxal bis(ethylthiocarbamate) were synthesized, isolated, and characterized by structural, electrochemical, and spectroscopic methods. The isomers are stable in solution under ambient conditions, but converts to in acid, consistent with quantum-chemical calculations.

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  • The uptake of nitrogen oxide (NO) into water-based aerosols is a significant process for nitrogen oxides' reduction in the atmosphere, but its detailed mechanisms are not fully understood.
  • Using advanced molecular dynamics simulations, researchers were able to analyze how NO interacts with water, finding that it tends to stick to the interface between air and water and is not easily absorbed into the bulk water.
  • The simulations led to important findings on reaction rates and solubility, providing a basis for understanding how NO reacts in more complicated mixtures beyond pure water.
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By adopting a perspective informed by contemporary liquid-state theory, we consider how to train an artificial neural network potential to describe inhomogeneous, disordered systems. We find that neural network potentials based on local representations of atomic environments are capable of describing some properties of liquid-vapor interfaces but typically fail for properties that depend on unbalanced long-ranged interactions that build up in the presence of broken translation symmetry. These same interactions cancel in the translationally invariant bulk, allowing local neural network potentials to describe bulk properties correctly.

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Choledochal cysts (CDC) are rare biliary tract anomalies characterized by congenital dilatation of the extrahepatic and/or intrahepatic bile ducts. CDC excision with hepatico-enterostomy is the preferred surgery in modern era. Perioperative blood loss in a case of laparoscopic choledochal cyst excision (LCCE) is usually minimal and managed by conservative treatment such as blood transfusion and correction of coagulation factors.

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  • Nitrogen oxides are removed from the troposphere when nitrogen monoxide (NO) reacts with aqueous aerosol, a process that's difficult to study directly due to rapid reactions.* -
  • Current understanding suggests that this reaction happens in the bulk of the aerosol, but field measurements conflict with this perspective.* -
  • Using molecular simulations, researchers found that the uptake of NO is actually more influenced by reactions at the liquid-vapor interface rather than the bulk, leading to a new model that aligns with experimental data.*
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Macrodystrophia lipomatosa (MDL) is a rare congenital non-hereditary condition characterised by an abnormal overgrowth of mesenchymal tissue of a digit or an extremity. Although MDL is interchangeably described by terms such as macrodactyly and macrosomia, the entity has to be differentiated from other acquired and hereditary causes of macrodactyly. Rare association with osteochondromas and lipomas in other parts of the body has also been reported.

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  • - The study evaluates how well different computational methods simulate the structure of water around sodium and potassium ions, which is crucial for understanding various phenomena involving these ions.
  • - Three computational approaches are used: revPBE-D3, SCAN, and RPA; results show that SCAN accurately reflects the hydration structure for sodium and potassium, while revPBE-D3 does not.
  • - Although SCAN captures hydration details better, it less accurately describes pure water compared to revPBE-D3, and RPA shows potential for improvement, although its slow convergence limits comparison.
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Mechanisms of CaCO nucleation from solutions that depend on multistage pathways and the existence of species far more complex than simple ions or ion pairs have recently been proposed. Herein, we provide a tightly coupled theoretical and experimental study on the pathways that precede the initial stages of CaCO nucleation. Starting from molecular simulations, we succeed in correctly predicting bulk thermodynamic quantities and experimental data, including equilibrium constants, titration curves, and detailed x-ray absorption spectra taken from the supersaturated CaCO solutions.

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First principles molecular dynamics simulation protocol is established using revised functional of Perdew-Burke-Ernzerhof (revPBE) in conjunction with Grimme's third generation of dispersion (D3) correction to describe the properties of water at ambient conditions. This study also demonstrates the consistency of the structure of water across both isobaric (NpT) and isothermal (NVT) ensembles. Going beyond the standard structural benchmarks for liquid water, we compute properties that are connected to both local structure and mass density fluctuations that are related to concepts of solvation and hydrophobicity.

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The dissociation and decomposition reactions of carbonic acid (H2CO3) in bulk water have been thoroughly studied, but little is known about its reactivity at the air-water interface. Herein, we investigate the dissociation reaction of H2CO3 at the air-water interface using ab initio molecular dynamics and metadynamics. Our results indicate that H2CO3 (pKa = 3.

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  • * In smaller water clusters (6-9 molecules), the decomposition follows a concerted proton shuttle mechanism, while in larger clusters (20-45 molecules), it shifts to a two-step process involving an intermediate ion pair.
  • * The research highlights that the transition between these mechanisms is influenced by the number of water molecules hydrogen bonded to the H₃O⁺ ion, suggesting that a bulk-like environment, provided by larger water clusters, favors the stepwise mechanism for H₂CO₃ decomposition.
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  • - The paper investigates how carbonic acid (H2CO3) behaves in water, focusing on its dissociation and decomposition, which are crucial for pH regulation in blood and CO2 transport.
  • - It analyzes three different forms of H2CO3 (cis-cis, cis-trans, and trans-trans conformers) using molecular dynamics, discovering that their reactions in water involve two main pathways, differing from gas-phase reactions.
  • - Findings reveal that the cis-cis conformer must first change into another conformer before decomposing, while the other two can decompose directly, highlighting new mechanisms for these reactions in aqueous environments.
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