Publications by authors named "Gabor Beke"

Carbon quantum dots (CQDs) are promising therapeutic agent due to their pro-oxidant, antioxidant, antiviral, antibacterial, and anticancer properties when exposed to visible light irradiation. Oxidative stress in bacteria is the main reason for bacteria death after exposure to blue light photoexcited quantum dots. Herein, we present the antibacterial activities of hydrophobic carbon quantum dots/polydimethylsiloxane nanocomposites, hydrophilic citric acid CQDs, and combinations of CQDs with methylene blue.

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Metabolomics has proven to be a sensitive tool for monitoring biochemical processes in cell culture. It enables multi-analysis, clarifying the correlation between numerous metabolic pathways. Together with other analysis, it thus provides a global view of a cell's physiological state.

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  • The gut microbiota of pediatric oncology patients undergoing hematopoietic stem cell transplantation may influence the occurrence of febrile neutropenia, particularly through shifts in antibiotic-resistant pathogens.
  • A study involving 18 patients revealed a significant drop in gut microbiome diversity and identified multiple antibiotic-resistance genes one week post-transplant, linked to febrile neutropenia.
  • Key findings indicated that over 50% of patients treated with certain antibiotics harbored resistance genes, making the gut microbiome's diversity and resistome potential indicators of febrile neutropenia outcomes.
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  • Graft-versus-host disease (GvHD) is a dangerous complication that can occur after hematopoietic stem cell transplantation (HSCT), and this study focused on the connection between GvHD and multidrug-resistant (MDR) gut bacteria in pediatric patients.
  • By analyzing 11 children with acute lymphoblastic leukemia before and after HSCT, the researchers found that GvHD patients had an increase in harmful MDR bacteria and a decline in gut microbiome diversity shortly after the procedure.
  • The study suggests that certain beneficial MDR bacteria could help maintain gut diversity and boost the immune response, potentially reducing the risk of GvHD in these patients, indicating important therapeutic possibilities.
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Congenital disorders of glycosylation (CDG) are a group of rare inherited metabolic disorders caused by a defect in the process of protein glycosylation. In this work, we present a comprehensive glycoprofile analysis of a male patient with a novel missense variant in the gene, coding a galactose transporter that translocates UDP-galactose from the cytosol to the lumen of the endoplasmic reticulum and Golgi apparatus. Isoelectric focusing of serum transferrin, which resulted in a CDG type II pattern, was followed by structural analysis of transferrin and serum -glycans, as well as the analysis of apolipoprotein CIII -glycans by mass spectrometry.

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To better characterize the heterogeneity of multiple myeloma (MM), we profiled plasma cells (PCs) and their B cell lymphopoiesis in the BM samples from patients with monoclonal gammopathy of undetermined significance, smoldering MM, and active MM by mass cytometry (CyTOF) analysis. Characterization of intra- and interneoplastic heterogeneity of malignant plasmablasts and PCs revealed overexpression of the MM SET domain (MMSET), Notch-1, and CD47. Variations in upregulation of B cell signaling regulators (IFN regulatory factor 4 [IRF-4], CXCR4, B cell lymphoma 6 [Bcl-6], c-Myc, myeloid differentiation primary response protein 88 [MYD88], and spliced X box-binding protein 1 [sXBP-1]) and aberrant markers (CD319, CD269, CD200, CD117, CD56, and CD28) were associated with different clinical outcomes in clonal PC subsets.

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  • Waldenström macroglobulinemia (WM) is a rare non-Hodgkin lymphoma marked by malignant lymphoplasmacytic cells in the bone marrow, where researchers studied the tumor microenvironment using mass cytometry (CyTOF).
  • The study found a significant increase in specific B cell types and changes in immune cell populations, indicating that certain immune responses in the bone marrow are linked to better overall survival in WM patients.
  • Results showed that immune checkpoints had a role in altering the immune landscape, and the effectiveness of the drug ibrutinib was connected to the levels of immature B cells and specific T cell subsets, highlighting CyTOF as a valuable tool for understanding WM and guiding treatments.
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  • Population aging drives the need for new therapies for bone diseases, prompting research into the osteogenic differentiation of human dental pulp stem cells (DPSCs).
  • The study utilized advanced techniques like mass spectrometry and nuclear magnetic resonance to analyze changes in proteins and metabolites during this differentiation, identifying 432 differentially abundant proteins and 8 key metabolites.
  • Significant molecular pathways related to osteogenic processes were highlighted, including PPAR, FoxO, and JAK-STAT signaling pathways, paving the way for future treatment strategies for bone defects.
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Weight loss interventions with probiotics have favourable effects on gut microbiota composition and derived metabolites. However, little is known about whether the consumption of natural probiotics, such as Bryndza cheeses, brings similar benefits. The purpose of the study was to find the effect of short-term weight loss programs and Bryndza cheese consumption on the structure of the gut microbiota, microbiota-derived metabolites and body composition in middle-aged women.

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  • Essential oils (EOs) are effective against a variety of microorganisms, and this study used a microarray approach to analyze gene expression in fungi exposed to the vapors of eight antifungal EOs.
  • The analysis revealed that, out of 12,675 genes, only 551 were annotated, while the rest were hypothetical, with 1,350 genes being upregulated and 765 downregulated when exposed to at least four EOs.
  • This research is significant as it marks the first instance of using microarray hybridization to study gene expression in fungi affected by different essential oils, highlighting the impact of EOs on metabolic processes vital to the organism.
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Plant viruses are a significant threat to a wide range of host species, causing substantial losses in agriculture. Particularly, Cucumber mosaic virus (CMV) evokes severe symptoms, thus dramatically limiting yield. Activation of plant defense reactions is associated with changes in the cellular proteome to ensure virus resistance.

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Plum pox virus (PPV, family Potyviridae) is one of the most important viral pathogens of Prunus spp. causing considerable damage to stone-fruit industry worldwide. Among the PPV strains identified so far, only PPV-C, PPV-CR, and PPV-CV are able to infect cherries under natural conditions.

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Viruses are the most abundant biological entities and the reservoir of most of the genetic diversity in the Earth's biosphere. Viral genomes are very diverse, generally short in length and compared to other organisms carry only few genes. viruSITE is a novel database which brings together high-value information compiled from various resources.

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A mathematical model simulating the interaction between bacteriophages and their bacterial hosts has been developed. It is based on other known models describing this type of interaction, enhanced with an ability to model the system influenced by other environmental factor such as pH and temperature. This could be used for numerous estimations of growth rate, when the pH and/or the temperature of the environment are not constant.

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Authors report a very rare case of splenic vein aneurysm in a 34-year-old female patient. She underwent investigation for upper abdominal pain which was not related to eating. Diagnostic workup revealed a thin wall saccular splenic vein aneurysm of 40 mm in diameter which caused an indentation of the posterior wall of the pancreas.

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