Trends in research approaches and gender in plant ecology dissertations over four decades.

Dissertations are a foundational scientific product; they are the formative product that early-career scientists create and share original knowledge. The methodological approaches used in dissertations vary with the research field. In plant ecology, these approaches include observations, experiments (field or controlled environment), literature reviews, theoretical approaches, or analyses of existing data (including "big data").

Managing forests for competing goals.

Tree plantations face difficult trade-offs between production and ecological goals.

Preferred reporting items for systematic reviews and meta-analyses in ecology and evolutionary biology: a PRISMA extension.

Since the early 1990s, ecologists and evolutionary biologists have aggregated primary research using meta-analytic methods to understand ecological and evolutionary phenomena. Meta-analyses can resolve long-standing disputes, dispel spurious claims, and generate new research questions. At their worst, however, meta-analysis publications are wolves in sheep's clothing: subjective with biased conclusions, hidden under coats of objective authority.

Consequences of multiple imputation of missing standard deviations and sample sizes in meta-analysis.

Meta-analyses often encounter studies with incompletely reported variance measures (e.g., standard deviation values) or sample sizes, both needed to conduct weighted meta-analyses.

Author Correction: Reproducibility of animal research in light of biological variation.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Reproducibility of animal research in light of biological variation.

Context-dependent biological variation presents a unique challenge to the reproducibility of results in experimental animal research, because organisms' responses to experimental treatments can vary with both genotype and environmental conditions. In March 2019, experts in animal biology, experimental design and statistics convened in Blonay, Switzerland, to discuss strategies addressing this challenge. In contrast to the current gold standard of rigorous standardization in experimental animal research, we recommend the use of systematic heterogenization of study samples and conditions by actively incorporating biological variation into study design through diversifying study samples and conditions.

Conventional land-use intensification reduces species richness and increases production: A global meta-analysis.

Most current research on land-use intensification addresses its potential to either threaten biodiversity or to boost agricultural production. However, little is known about the simultaneous effects of intensification on biodiversity and yield. To determine the responses of species richness and yield to conventional intensification, we conducted a global meta-analysis synthesizing 115 studies which collected data for both variables at the same locations.

Correlation of native and exotic species richness: a global meta-analysis finds no invasion paradox across scales.

Support for the "biotic resistance hypothesis," that species-rich communities are more successful at resisting invasion by exotic species than are species-poor communities, has long been debated. It has been argued that native-exotic richness relationships (NERR) are negative at small spatial scales and positive at large scales, but evidence for the role of spatial scale on NERR has been contradictory. However, no formal quantitative synthesis has previously examined whether NERR is scale-dependent across multiple studies, and previous studies on NERR have not distinguished spatial grain and extent, which may drive very different ecological processes.

Empowering peer reviewers with a checklist to improve transparency.

Peer review is widely considered fundamental to maintaining the rigour of science, but it often fails to ensure transparency and reduce bias in published papers, and this systematically weakens the quality of published inferences. In part, this is because many reviewers are unaware of important questions to ask with respect to the soundness of the design and analyses, and the presentation of the methods and results; also some reviewers may expect others to be responsible for these tasks. We therefore present a reviewers' checklist of ten questions that address these critical components.

Meta-analysis and the science of research synthesis.

Meta-analysis is the quantitative, scientific synthesis of research results. Since the term and modern approaches to research synthesis were first introduced in the 1970s, meta-analysis has had a revolutionary effect in many scientific fields, helping to establish evidence-based practice and to resolve seemingly contradictory research outcomes. At the same time, its implementation has engendered criticism and controversy, in some cases general and others specific to particular disciplines.

Potentially dangerous consequences for biodiversity of solar geoengineering implementation and termination.

Solar geoengineering is receiving increased policy attention as a potential tool to offset climate warming. While climate responses to geoengineering have been studied in detail, the potential biodiversity consequences are largely unknown. To avoid extinction, species must either adapt or move to track shifting climates.

Scale-dependent portfolio effects explain growth inflation and volatility reduction in landscape demography.

Population demography is central to fundamental ecology and for predicting range shifts, decline of threatened species, and spread of invasive organisms. There is a mismatch between most demographic work, carried out on few populations and at local scales, and the need to predict dynamics at landscape and regional scales. Inspired by concepts from landscape ecology and Markowitz's portfolio theory, we develop a landscape portfolio platform to quantify and predict the behavior of multiple populations, scaling up the expectation and variance of the dynamics of an ensemble of populations.

Landscape Demography: Population Change and its Drivers Across Spatial Scales.

Demographic studies of plants and animals have a rich history and literature in ecology, and are important for both fundamental and applied ecology and conservation biology. Almost all demographic work has focused on intensive studies in which births, deaths, growth of individuals, and related measures are quantified in a single population or a few populations. This has been for practical reasons due to the high demands of labor required for this work, and because the questions addressed in these studies have been asked at the level of individual populations, with implicit assumptions about generalizing from the results.

Harmonizing Biodiversity Conservation and Productivity in the Context of Increasing Demands on Landscapes.

Biodiversity conservation and agricultural production are often seen as mutually exclusive objectives. Strategies for reconciling them are intensely debated. We argue that harmonization between biodiversity conservation and crop production can be improved by increasing our understanding of the underlying relationships between them.

Transparency in Ecology and Evolution: Real Problems, Real Solutions.

To make progress scientists need to know what other researchers have found and how they found it. However, transparency is often insufficient across much of ecology and evolution. Researchers often fail to report results and methods in detail sufficient to permit interpretation and meta-analysis, and many results go entirely unreported.

Meta-analysis and meta-regression of transcriptomic responses to water stress in Arabidopsis.

The large amounts of transcriptome data available for Arabidopsis thaliana make a compelling case for the need to generalize results across studies and extract the most robust and meaningful information possible from them. The results of various studies seeking to identify water stress-responsive genes only partially overlap. The aim of this work was to combine transcriptomic studies in a systematic way that identifies commonalities in response, taking into account variation among studies due to batch effects as well as sampling variation, while also identifying the effect of study-specific variables, such as the method of applying water stress, and the part of the plant the mRNA was extracted from.

Quantification of Food Waste Disposal in the United States: A Meta-Analysis.

Food waste has major consequences for social, nutritional, economic, and environmental issues, and yet the amount of food waste disposed in the U.S. has not been accurately quantified.

Biological invasions: a field synopsis, systematic review, and database of the literature.

Species introductions of anthropogenic origins are a major aspect of rapid ecological change globally. Research on biological invasions has generated a large literature on many different aspects of this phenomenon. Here, we describe and categorize some aspects of this literature, to better understand what has been studied and what we know, mapping well-studied areas and important gaps.