Publications by authors named "G Pohnert"

Diatoms are single-celled photosynthetic eukaryotes responsible for CO fixation and primary production in aquatic ecosystems. The cosmopolitan marine diatom can form seasonal blooms in coastal areas and interact with various microorganisms, including the parasitic oomycete . This unicellular eukaryote is mainly present in the northern hemisphere as an obligate parasite of the genus Understanding the interplay of abiotic factors such as temperature and biotic factors like parasitism on algal physiology is crucial as it dictates plankton community composition and is especially relevant during environmental changes and warming events.

View Article and Find Full Text PDF

Extracellular proteins play a significant role in shaping microbial communities which, in turn, can impact ecosystem function, human health, and biotechnological processes. Yet, for many ubiquitous microbes, there is limited knowledge regarding the identity and function of secreted proteins. Here, we introduce EXCRETE (enhanced exoproteome characterization by mass spectrometry), a workflow that enables comprehensive description of microbial exoproteomes from minimal starting material.

View Article and Find Full Text PDF

The bloom and bust patterns of microalgae in aquatic systems contribute massively to global biogeochemical cycles. The decline of algal blooms is mainly caused by nutrient limitation resulting in cell death, the arrest of cell division and the aging of surviving cells. Nutrient intake can re-initiate proliferation, but the processes involved are poorly understood.

View Article and Find Full Text PDF

Electron ionization (EI) and molecular ion-generating techniques like chemical ionization (CI) are complementary ionization methods in gas chromatography (GC)-mass spectrometry (MS). However, manual curation effort and expert knowledge are required to correctly assign molecular ions to fragment spectra. MSdeCIpher is a software tool that enables the combination of two separate datasets from fragment-rich spectra, like EI-spectra, and soft ionization spectra containing molecular ion candidates.

View Article and Find Full Text PDF

Ectoine is a central osmolyte in marine plankton due to its excellent cytoprotective traits and its multifunctional roles supporting the survival of microalgae and bacteria under unfavorable environmental conditions. The protective effect of ectoine toward several kinds of stresses stirred interest in biotechnology, pharmacy, and other fields including cosmetics. Also, its hydroxylated derivative, 5-hydroxyectoine, exhibits functions similar to ectoine.

View Article and Find Full Text PDF