Publications by authors named "Frantz L"

The origins and prehistory of domestic sheep () are incompletely understood; to address this, we generated data from 118 ancient genomes spanning 12,000 years sampled from across Eurasia. Genomes from Central Türkiye ~8000 BCE are genetically proximal to the domestic origins of sheep but do not fully explain the ancestry of later populations, suggesting a mosaic of wild ancestries. Genomic signatures indicate selection by ancient herders for pigmentation patterns, hornedness, and growth rate.

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Returning to campus after remote learning during the COVID-19 pandemic, many of us were excited about participating in interactive, hands-on health promotion for students. In response, our Office of Wellness Promotion planned a student health and well-being expo in partnership with the university's College of Health Sciences (CHS). Faculty were invited to involve their students in the delivery.

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  • - Bos taurus and Bos indicus cattle diverged over 150,000 years ago, leading to significant genomic differences and complex genetic mixing in African and Southern European cattle populations over the millennia.
  • - Using software tools MOSAIC and ELAI, researchers analyzed the ancestry of hybrid African and Southern European cattle and found common genomic regions indicating retained or introgressed ancestry from various lineages, demonstrating the effectiveness of both methodologies.
  • - The study highlighted that certain genomic regions relate to important biological functions, particularly in diseases like bovine tuberculosis and trypanosomiasis, showing how retained African taurine ancestry may help cattle manage severe anaemia, improving livestock resilience in sub-Saharan Africa.
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  • - The aurochs (Bos primigenius), now extinct, was a critical species in prehistoric Eurasian and North African ecosystems and is the ancestor of today's cattle, playing a significant role in providing food and labor for humans over thousands of years.
  • - Researchers analyzed 38 ancient genomes, identifying four distinct aurochs populations (European, Southwest Asian, North Asian, and South Asian) that adapted to climate changes and human impacts throughout history.
  • - The genetic study revealed that North Asian and European aurochs populations were separated until they mixed after the last glacial period, with domestication originating from a small group of individuals from Southwest Asia, leading to a hybridization with various aurochs strains.
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Livestock guarding dogs (LGDs) have been used to protect livestock for millennia. While previous works suggested a single origin of modern LGDs, the degree and source of shared ancestry have not been tested. To address this, we generated genome-wide SNP data from 304 LGDs and combined it with public genomic data from 2,183 modern and 22 ancient dogs.

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The multi-millenia long history between dogs and humans has placed them at the forefront of archeological and genomic research. Despite ongoing efforts including the analysis of ancient dog and wolf genomes, many questions remain regarding their geographic and temporal origins, and the microevolutionary processes that led to the diversity of breeds today. Although ancient genomes provide valuable information, their use is hindered by low depth of coverage and post-mortem damage, which inhibits confident genotype calling.

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  • The Pre-Pottery Neolithic site of Aşıklı Höyük, occupied roughly 10,300 to 9,300 years ago in Central Anatolia, is associated with the early domestication of sheep, transitioning from residential stabling to open pasturing over time.
  • Genetic analysis of 629 mitochondrial genomes revealed unexpected high genetic diversity during occupation, contradicting the earlier assumption of a domestication bottleneck.
  • A significant demographic bottleneck was instead identified later in the Neolithic, leading to the dominance of a specific mitochondrial haplogroup in southwestern Anatolia that influenced sheep populations in Europe and today’s global sheep diversity.
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The southern Mendoza province, located in the northern region of Patagonia, was inhabited by hunter-gatherer groups until historic times. Previous archaeological studies have reported canid remains among faunal assemblages, which were assumed to be part of the human diet. However, the taxonomic identification and significance of these canids within human groups have raised questions.

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Criollo cattle, the descendants of animals brought by Iberian colonists to the Americas, have been the subject of natural and human-mediated selection in novel tropical agroecological zones for centuries. Consequently, these breeds have evolved distinct characteristics such as resistance to diseases and exceptional heat tolerance. In addition to European taurine () ancestry, it has been proposed that gene flow from African taurine and Asian indicine () cattle has shaped the ancestry of Criollo cattle.

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  • The FarmGTEx project aims to create a public database of genetic variants in livestock to connect genetic differences with physical traits, benefiting both animal breeding and human health research.
  • The pilot phase, PigGTEx, involved analyzing 5,457 RNA-sequencing and 1,602 whole-genome sequencing samples from pigs, leading to the development of a genotype imputation panel and associations between millions of genetic variants and transcriptomic traits across 34 different tissues.
  • The study highlights the tissue-specific regulatory effects of these variants, revealing molecular mechanisms affecting 207 complex pig traits while also demonstrating the relevance of pigs as models for understanding human gene expression and genetic regulation.
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The pronounced growth in livestock populations since the 1950s has altered the epidemiological and evolutionary trajectory of their associated pathogens. For example, Marek's disease virus (MDV), which causes lymphoid tumors in chickens, has experienced a marked increase in virulence over the past century. Today, MDV infections kill >90% of unvaccinated birds, and controlling it costs more than US$1 billion annually.

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Ancestral Coast Salish societies in the Pacific Northwest kept long-haired "woolly dogs" that were bred and cared for over millennia. However, the dog wool-weaving tradition declined during the 19th century, and the population was lost. In this study, we analyzed genomic and isotopic data from a preserved woolly dog pelt from "Mutton," collected in 1859.

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Background: The red junglefowl, the wild outgroup of domestic chickens, has historically served as a reference for genomic studies of domestic chickens. These studies have provided insight into the etiology of traits of commercial importance. However, the use of a single reference genome does not capture diversity present among modern breeds, many of which have accumulated molecular changes due to drift and selection.

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Objectives: To assess the long-term aesthetic and functional aspects of implant-supported crowns in lateral (ISC-L) and canine positions (ISC-C).

Materials And Methods: Thirty-two patients (14 males, 18 females, mean age: 23.1, SD:2.

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The European wildcat population in Scotland is considered critically endangered as a result of hybridization with introduced domestic cats, though the time frame over which this gene flow has taken place is unknown. Here, using genome data from modern, museum, and ancient samples, we reconstructed the trajectory and dated the decline of the local wildcat population from viable to severely hybridized. We demonstrate that although domestic cats have been present in Britain for over 2,000 years, the onset of hybridization was only within the last 70 years.

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Domestic cats were derived from the Near Eastern wildcat (Felis lybica), after which they dispersed with people into Europe. As they did so, it is possible that they interbred with the indigenous population of European wildcats (Felis silvestris). Gene flow between incoming domestic animals and closely related indigenous wild species has been previously demonstrated in other taxa, including pigs, sheep, goats, bees, chickens, and cattle.

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Methicillin-resistant Staphylococcus aureus (MRSA) is a major healthcare concern with associated healthcare costs reaching over ${\$}$1 billion in a single year in the USA. Antibiotic resistance in S. aureus is now observed against last line of defense antibiotics, such as vancomycin, linezolid, and daptomycin.

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  • The Dog10K project sequenced genomes from 1,987 canids, including 1,611 dogs of 321 breeds, to study genetics related to domestication and health.
  • The analysis identified over 48 million genetic variants and highlighted that most breeds exhibit strong genetic clustering, with German Shepherds showing notable genetic similarities with various breeds.
  • This extensive dataset enhances understanding of canine genetics and can be used as a reliable reference for future genetic studies, with all data now publicly accessible.
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The Sicilian wolf remained isolated in Sicily from the end of the Pleistocene until its extermination in the 1930s-1960s. Given its long-term isolation on the island and distinctive morphology, the genetic origin of the Sicilian wolf remains debated. We sequenced four nuclear genomes and five mitogenomes from the seven existing museum specimens to investigate the Sicilian wolf ancestry, relationships with extant and extinct wolves and dogs, and diversity.

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Purpose: The initial office visit can be a stressful time for families with children with congenital upper extremity differences. These families may have concerns that differ from the information that pediatric hand surgeons believe is important to discuss. The purpose of this study was to compare topics that families and surgeons believe are most important to address at the initial office visits to better inform and guide that visit.

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Hybridization is widely recognized as promoting both species and phenotypic diversity. However, its role in mammalian evolution is rarely examined. We report historical hybridization among a group of snub-nosed monkeys () that resulted in the origin of a hybrid species.

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Background: Unconscious bias of the clinician favors the diagnosis of carpal tunnel syndrome (CTS) in patients with median paresthesia. We hypothesized that more patients in this cohort would be diagnosed with proximal median nerve entrapment (PMNE) by strengthening our cognitive awareness of this alternative diagnosis. We also hypothesized that patients with PMNE may be successfully treated with surgical release of the lacertus fibrosus (LF).

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Wallacea-the meeting point between the Asian and Australian fauna-is one of the world's largest centers of endemism. Twenty-three million years of complex geological history have given rise to a living laboratory for the study of evolution and biodiversity, highly vulnerable to anthropogenic pressures. In the present article, we review the historic and contemporary processes shaping Wallacea's biodiversity and explore ways to conserve its unique ecosystems.

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