Quantifying genome-specific carbon fixation in a 750-meter deep subsurface hydrothermal microbial community.

Dissolved inorganic carbon has been hypothesized to stimulate microbial chemoautotrophic activity as a biological sink in the carbon cycle of deep subsurface environments. Here, we tested this hypothesis using quantitative DNA stable isotope probing of metagenome-assembled genomes (MAGs) at multiple 13C-labeled bicarbonate concentrations in hydrothermal fluids from a 750-m deep subsurface aquifer in the Biga Peninsula (Turkey). The diversity of microbial populations assimilating 13C-labeled bicarbonate was significantly different at higher bicarbonate concentrations, and could be linked to four separate carbon-fixation pathways encoded within 13C-labeled MAGs.

High methane ebullition throughout one year in a regulated central European stream.

Ebullition transports large amounts of the potent greenhouse gas methane (CH ) from aquatic sediments to the atmosphere. River beds are a main source of biogenic CH , but emission estimates and the relative contribution of ebullition as a transport pathway are poorly constrained. This study meets a need for more direct measurements with a whole-year data set on CH ebullition from a small stream in southern Germany.

Carbon metabolism and biogeography of candidate phylum " Bipolaricaulota" in geothermal environments of Biga Peninsula, Turkey.

Terrestrial hydrothermal springs and aquifers are excellent sites to study microbial biogeography because of their high physicochemical heterogeneity across relatively limited geographic regions. In this study, we performed 16S rRNA gene sequencing and metagenomic analyses of the microbial diversity of 11 different geothermal aquifers and springs across the tectonically active Biga Peninsula (Turkey). Across geothermal settings ranging in temperature from 43 to 79°C, one of the most highly represented groups in both 16S rRNA gene and metagenomic datasets was affiliated with the uncultivated phylum " Bipolaricaulota" (former " Acetothermia" and OP1 division).

Improved Lumped-Parameter and Numerical Modeling of Unsaturated Water Flow and Stable Water Isotopes.

Characterizing unsaturated water flow in the subsurface is a requirement for understanding effects of droughts on agricultural production or impacts of climate change on groundwater recharge. By employing an improved lumped-parameter model (LPM) approach that mimics variable flow we have interpreted stable water isotope data (δ O and δ H), taken over 3 years at a lysimeter site located in Germany. Lysimeter soil cores were characterized by sandy gravel (Ly1) and clayey sandy silt (Ly2), and both lysimeters were vegetated with maize.

Strategies to Overcome Intermediate Accumulation During Nitrate Remediation in Groundwater by Hydrogenotrophic Denitrification.

Bioremediation of polluted groundwater is one of the most difficult actions in environmental science. Nonetheless, the clean-up of nitrate polluted groundwater may become increasingly important as nitrate concentrations frequently exceed the EU drinking water limit of 50 mg L, largely due to intensification of agriculture and food production. Denitrifiers are natural catalysts that can reduce increasing nitrogen loading of aquatic ecosystems.

Dechloromonas and close relatives prevail during hydrogenotrophic denitrification in stimulated microcosms with oxic aquifer material.

Globally occurring nitrate pollution in groundwater is harming the environment and human health. In situ hydrogen addition to stimulate denitrification has been proposed as a remediation strategy. However, observed nitrite accumulation and incomplete denitrification are severe drawbacks that possibly stem from the specific microbial community composition.

Characterizing Water Flow in Vegetated Lysimeters with Stable Water Isotopes and Modeling.

We have used stable water isotopes (δ O, δ H) in combination with lumped-parameter modeling for characterizing unsaturated flow in two lysimeters vegetated with maize. The lysimeters contained undisturbed soil cores dominated by sandy gravel (Ly1) and clayey sandy silt (Ly2). Stable water isotopes were analyzed in precipitation and lysimeter outflow water over about 3 years.

Monte Carlo Simulations as a Decision Support to Interpret δ N Values of Nitrate in Groundwater.

Intense farming is often associated with the excessive use of manure or fertilizers and the subsequent deterioration of the groundwater quality in many aquifers worldwide. Stable isotopes of dissolved nitrate (δ N and δ O) are widely used to determine sources of nitrate contamination and denitrification processes in groundwater but are often difficult to interpret. Thus, Monte Carlo simulations were carried out for a site in lower Bavaria, Germany, in order to explain δ N observations in a porous groundwater system with two aquifers, the main aquifer (MA) and several smaller perched aquifers (PA).

Evaluation and source attribution of freshwater contributions to Kinvarra Bay, Ireland, using (222)Rn, EC and stable isotopes as natural indicators.

Freshwater discharge into the coastal sea is of general interest for two reasons: (i) It acts as vehicle for the transport of contaminants or nutrients into the ocean, and (ii) it indicates the loss of significant volumes of freshwater that might be needed for irrigation or drinking water supply. Due to the large-scale and long-term nature of the related hydrological processes, locating and quantitatively assessing freshwater discharge into the sea require naturally occurring tracers that allow fast, inexpensive and straightforward detection. In several studies, the standard water parameters electrical conductivity (EC) and pH have proven their suitability in this regard.

Effect of different carbon substrates on nitrate stable isotope fractionation during microbial denitrification.

In batch experiments, we studied the isotope fractionation in N and O of dissolved nitrate during dentrification. Denitrifying strains Thauera aromatica and "Aromatoleum aromaticum strain EbN1" were grown under strictly anaerobic conditions with acetate, benzoate, and toluene as carbon sources. (18)O-labeled water and (18)O-labeled nitrite were added to the microcosm experiments to study the effect of putative backward reactions of nitrite to nitrate on the stable isotope fractionation.

The reversibility of dissimilatory sulphate reduction and the cell-internal multi-step reduction of sulphite to sulphide: insights from the oxygen isotope composition of sulphate.

Dissimilatory sulphate reduction (DSR) leads to an overprint of the oxygen isotope composition of sulphate by the oxygen isotope composition of water. This overprint is assumed to occur via cell-internally formed sulphuroxy intermediates in the sulphate reduction pathway. Unlike sulphate, the sulphuroxy intermediates can readily exchange oxygen isotopes with water.

Occurrence and transport of pharmaceuticals in a karst groundwater system affected by domestic wastewater treatment plants.

The occurrence of two pharmaceuticals, ibuprofen and diclofenac, in a vulnerable karst groundwater system was investigated. The hydrogeology of the karst system was identified by collecting (3)H samples in groundwater over 27years and by performing tracer tests. The isotopes and tracer data were interpreted by mathematical modeling to estimate the mean transit time of water and to characterize the hydrogeological flow paths in the groundwater system.

Biogeochemical and isotopic gradients in a BTEX/PAH contaminant plume: model-based interpretation of a high-resolution field data set.

A high spatial resolution data set documenting carbon and sulfur isotope fractionation at a tar oil-contaminated, sulfate-reducing field site was analyzed with a reactive transport model. Within a comprehensive numerical model, the study links the distinctive observed isotope depth profiles with the degradation of various monoaromatic and polycyclic aromatic hydrocarbon compounds (BTEX/PAHs) under sulfate-reducing conditions. In the numerical model, microbial dynamics were simulated explicitly and isotope fractionation was directly linked to the differential microbial uptake of lighter and heavier carbon isotopes during microbial growth.

Effect of NO2(-) on stable isotope fractionation during bacterial sulfate reduction.

The effects of low NO2(-) concentrations on stable isotope fractionation during dissimilatory sulfate reduction by strain Desulfovibrio desulfuricans were investigated. Nitrite, formed as an intermediate during nitrification and denitrification processes in marine and freshwater habitats, inhibits the reduction of the sulfuroxy intermediate SO3(2-) to H2S even at low concentrations. To gain an understanding of the inhibition effect of the reduction of the sulfuroxy intermediate on stable isotope fractionation in sulfur and oxygen during bacterial sulfate reduction, nitrite was added in the form of short pulses.

Evidence for incorporation of H2S in groundwater fulvic acids from stable isotope ratios and sulfur K-edge X-ray absorption near edge structure spectroscopy.

Groundwater samples collected in a shallow oxic and reduced deep groundwater system revealed the influence of dissolved sulfide on the chemical and isotopic composition of fulvic acid associated sulfur. Stable isotope compositions of groundwater sulfate and fulvic acid sulfur and sulfur K-edge X-ray absorption near edge structure (XANES) spectroscopy data were used to determine the sources and processes affecting fulvic acid sulfur in the aquifer. A delta34S value of 2.

Hydrodynamic and microbial processes controlling nitrate in a fissured-porous karst aquifer of the Franconian Alb, southern Germany.

Concentrations and stable isotope compositions of nitrate from 11 karst springs in the Franconian Alb (southern Germany) were determined during low flow and high flow conditions to assess sources and processes affecting groundwater nitrate. During low flow, nitrate concentrations in groundwater were around 0.10 mM in springs draining forested catchments, whereas in agricultural areas nitrate concentrations were typically higher reaching up to 0.

Sources and processes affecting sulfate in a karstic groundwater system of the Franconian Alb, southern Germany.

Chemical and isotope analyses on groundwater sulfate and 3H measurements on groundwaterwere used to determine the sulfate sources and sulfur transformation processes in a heterogeneous karst aquifer of the Franconian Alb, southern Germany. Sulfate was found to be derived from atmospheric deposition. Young groundwater was characterized by high sulfate concentrations and delta34S values similar to those of recent atmospheric sulfate deposition.