Publications by authors named "Finlay MaCrae"

Carcinogenesis encompasses processes that lead to increased mutation rates, enhanced cellular division (tumour growth), and invasive growth. Colorectal cancer (CRC) carcinogenesis in carriers of pathogenic APC (path_APC) and pathogenic mismatch repair gene (path_MMR) variants is initiated by a second hit affecting the corresponding wild-type allele. In path_APC carriers, second hits result in the development of multiple adenomas, with CRC typically emerging after an additional 20 years.

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Background: Colorectal cancers (CRCs) from people with biallelic germline likely pathogenic/pathogenic variants in MUTYH or NTHL1 exhibit specific single base substitution (SBS) mutational signatures, namely combined SBS18 and SBS36 (SBS18+SBS36), and SBS30, respectively. The aim was to determine if adenomas from biallelic cases demonstrated these mutational signatures at diagnostic levels.

Methods: Whole-exome sequencing of FFPE tissue and matched blood-derived DNA was performed on 9 adenomas and 15 CRCs from 13 biallelic MUTYH cases, on 7 adenomas and 2 CRCs from 5 biallelic NTHL1 cases and on 27 adenomas and 26 CRCs from 46 non-hereditary (sporadic) participants.

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While corticosteroids have led to significant reduction in ASUC mortality over the last few decades, they are associated with significant side effects and up to 30% of patients have steroid refractory ASUC, which means we require safer and better therapies for patients with ASUC. Several salvage therapies have been proposed in guidelines; however, we lack high quality head-to-head randomised controlled trials to assess effectiveness and safety of these agents. Furthermore, the role of newer novel agents in ASUC management is unclear.

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Menopausal users of hormone replacement therapy (HRT) are at increased breast cancer risk and decreased colorectal cancer (CRC) risk compared with individuals who have never used HRT, but these opposing associations may differ by familial risk of breast cancer and CRC. We harmonized data from 3 cohorts and generated separate breast cancer and CRC familial risk scores based on cancer family history. We defined moderate or strong family history as a risk score of 0.

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Aims: This study aims to evaluate the current state of endoscopy services in Pacific Island Countries (PICs) by quantifying human and material resources, including the number of trained endoscopists and nurses, the types of procedures performed, and the availability and maintenance of endoscopic equipment.

Methods And Results: A mixed methods survey was conducted in 2023, targeting doctors and nurses who participated in the WGO-FNU-ANZGITA endoscopy training program as well as non-participants. Survey invitations were sent through email, WhatsApp, and Facebook Messenger.

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Article Synopsis
  • - Pathogenic variants in the APC gene are responsible for familial adenomatous polyposis, the most common hereditary gastrointestinal polyposis syndrome, prompting the development of specific classification criteria to aid in variant interpretation.
  • - The study involved applying these APC-specific criteria to assess over 10,000 unique APC variants from databases like ClinVar and LOVD, leading to a significant reclassification of variants of uncertain significance (VUSs), with many being reassessed as (likely) benign or (likely) pathogenic.
  • - The results showed that using these tailored criteria effectively reduced VUSs by 37%, highlighted the potential for systematic variant classification in large datasets, and established a model that could benefit future genetic variant interpretation efforts in
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Background: Pathological reactivation of latent Cytomegalovirus (CMV) is triggered by inflammation and immunosuppression; both present in the pathogenesis and treatment of Inflammatory Bowel Disease (IBD). Whether CMV reactivation is associated with escalating medical therapy, further hospital admissions, or worse clinical outcomes remains controversial. This study aimed to follow up IBD patients with an index episode of CMV colitis and analyse the clinical outcomes.

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  • - This study investigates the relationship between mental and physical health and participation in colorectal cancer screening among individuals aged 45-75 with no prior diagnosis of cancer.
  • - Out of 1130 eligible participants, approximately 72% reported that they had undergone screening in the past 5 years, but overall mental and physical health did not significantly influence screening behavior.
  • - However, individuals who rated their general health as higher were slightly more likely to participate in screening, indicating some association, though the findings may not apply broadly due to the high percentage of participants with a family history of colorectal cancer.
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Background: Cancer survivors can be at risk of cardiovascular disease (CVD) because of either their malignancy or its treatment. Although studies linking cancer and CVD exist, few examine risk in older adults, the impact of cancer treatment, or the effect of aspirin on reducing risk in this cohort.

Methods: The authors conducted a secondary analysis of the Aspirin in Reducing Events in the Elderly (ASPREE) trial to investigate the impact of cancer and cancer treatment on a composite CVD end point comprising hospitalization for heart failure (HHF), myocardial infarction (MI), and stroke.

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Background: Adrenal tumours are associated with familial adenomatous polyposis (FAP). In the literature, most studies use the clinical definition of FAP (more than 100 adenomatous polyps found in endoscopic studies). However, not all patients that meet clinical criteria for FAP carry pathogenic mutations in the adenomatous polyposis coli (APC) gene, as there is genetic heterogeneity responsible for FAP with the polyposis sometimes explained by genetic and environmental factors other than pathogenic APC mutations.

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Article Synopsis
  • Colorectal cancers (CRCs) linked to biallelic germline variants show specific mutational signatures (SBS18+SBS36 and SBS30) that could also be present in adenomas, which are precursors to CRCs.
  • A study sequenced DNA from adenomas and CRCs in biallelic cases and compared them with sporadic cases to investigate these signatures.
  • Results indicated that adenomas in biallelic cases had similar mutational signature proportions as their corresponding CRCs, suggesting testing adenomas could enhance the detection of biallelic cases and improve variant classification for better CRC prevention strategies.
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-associated polyposis (MAP) is an autosomal recessive disorder where the inheritance of constitutional biallelic pathogenic variants predisposes a person to the development of adenomas and colorectal cancer (CRC). It is also associated with extracolonic and extraintestinal manifestations that may overlap with the phenotype of familial adenomatous polyposis (FAP). Currently, there are discrepancies in the literature regarding whether certain phenotypes are truly associated with MAP.

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  • Consumption of fiber, fruits, and vegetables may lower the risk of colorectal cancer (CRC), but genetic factors might influence this connection.
  • A large study involving nearly 70,000 participants identified two significant genetic variants linked to dietary intake and CRC risk using advanced statistical methods.
  • The findings suggest specific genetic loci (SLC26A3 and NEGR1) may affect how fiber and fruit consumption interacts with CRC risk, highlighting the need for more research on the underlying mechanisms.
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  • The study focused on improving the classification of genetic variants linked to familial adenomatous polyposis using APC-specific criteria developed by an expert panel.
  • A total of 10,228 unique variants were analyzed, resulting in 41% of VUS from ClinVar and 61% from LOVD being reclassified, primarily as (Likely) Benign, which reduced the overall VUS by 37%.
  • The research highlighted a systematic approach to variant classification in large datasets that could be applied to other gene/disease interpretations and allowed for prioritization of VUS requiring further evidence collection.
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Background: Colorectal cancers (CRCs) in the Lynch syndromes have been assumed to emerge through an accelerated adenoma-carcinoma pathway. In this model adenomas with deficient mismatch repair have an increased probability of acquiring additional cancer driver mutation(s) resulting in more rapid progression to malignancy. If this model was accurate, the success of colonoscopy in preventing CRC would be a function of the intervals between colonoscopies and mean sojourn time of detectable adenomas.

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  • Australian guidelines suggest that individuals aged 50-70 should consider low-dose aspirin to lower colorectal cancer risk; this study aimed to assess whether a research consultation improves informed decision-making about aspirin use compared to a general prevention brochure.
  • Conducted at six general practices in Victoria, Australia, between October 2020 and March 2021, the study randomized 261 participants, comparing a decision aid consultation with a standard CRC prevention discussion.
  • Results showed that 17.7% of the intervention group made informed choices about taking aspirin by the first month, compared to 7.6% in the control group; however, at the six-month mark, aspirin uptake between the two groups was similar with 10.2% in the
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  • The study examined the connection between certain bacteria (pks E. coli, Enterotoxigenic Bacteroides fragilis, and Fusobacterium nucleatum) and colorectal cancer (CRC) by analyzing DNA samples from various cohorts.
  • Results revealed that pks E. coli is linked to male CRC patients and a specific APC gene mutation, mainly in early-onset cases, while F. nucleatum correlates with various cancer traits including DNA repair deficiencies and specific tumor locations.
  • The findings suggest that pks E. coli might cause DNA damage related to the identified mutation, and F. nucleatum exists in both hereditary and sporadic factors of DNA mismatch repair deficiencies, highlighting the importance of the tumor environment for bacterial colon
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  • Juvenile polyposis syndrome (JPS) affects 1 in 100,000 births and significantly increases cancer risk, primarily due to variants in the SMAD4 and BMPR1A genes.
  • Most pathogenic variants in SMAD4 are found in its MH2 domain, which correlates with more severe disease traits, including increased incidence of gastrointestinal (GI) cancers.
  • Recommendations include careful surveillance and endoscopic screening for patients with SMAD4-related JPS due to these associations with greater risks of cancer and other complicating conditions.
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  • The study investigates a unique multi-generation family affected by colorectal cancer (CRC) with pathogenic variants in the BRCA1 and RNF43 genes, which are linked to breast/ovarian cancer and Serrated Polyposis Syndrome, respectively.
  • Out of 105 families eligible for Familial Colorectal Cancer Type X, this particular family underwent whole exome sequencing, revealing 10 carriers of a BRCA1 variant and 8 of an RNF43 variant, with some individuals developing CRC.
  • The analysis showed loss of heterozygosity in CRC tumors related to both genes, indicating that both BRCA1 and RNF43 play critical roles in the development of CRC through digenic inheritance and homologous recombination
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Objectives: Australian guidelines recommend 50-70 years consider taking aspirin to reduce their bowel cancer risk. We trialled a decision aid in general practice to facilitate the implementation of these guidelines into clinical practice. This publication reports on the qualitative results from the process evaluation of the trial.

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  • - Australia has high colorectal cancer rates, and participation in its National Bowel Cancer Screening Program (NBCSP) is low, particularly among those aged 50-60.
  • - Previous research (SMARTscreen) showed that sending SMS messages with motivational content increased participation by 16.5% compared to standard practice.
  • - The new SMARTERscreen trial will evaluate whether sending just an SMS or an SMS with online videos can further boost NBCSP participation among patients aged 49-60, using a randomized controlled design across 63 general practices.
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  • * A study analyzed 28 tumors from 25 patients with variants of uncertain significance (VUS) in MMR genes to evaluate how specific tumor characteristics help classify these genetic variants.
  • * The results reclassified 28% of VUS as likely pathogenic, with the majority confirming features like microsatellite instability and MMR deficiency, suggesting that recognizing these characteristics can enhance clinical decision-making.
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There is notable disparity between symptomatology and disease activity in a significant proportion of patients with inflammatory bowel disease (IBD), and escalation of treatment based on symptoms alone can fail to significantly alter the course of disease. The STRIDE-II position statement, published in 2021 by the Selecting Therapeutic Targets in Inflammatory Bowel Disease (STRIDE) initiative of the International Organisation for the Study of IBD (IOIBD) provides the most current recommendations for a treat-to-target (T2T) approach in IBD. Despite the benefits offered by a T2T approach in IBD, there are numerous drawbacks and current limitations to its widespread implementation in real-world clinical practice.

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  • The Hereditary Colorectal Cancer/Polyposis Variant Curation Expert Panel (VCEP) was created to improve the interpretation of APC gene variants associated with Familial Adenomatous Polyposis, a common hereditary condition.
  • Through analysis and expert input, the panel developed gene-specific modifications to existing variant classification guidelines, piloting these changes on 58 variants.
  • The new APC-specific criteria successfully reduced the number of uncertain significance variants and maintained the classification of well-established ones, which will aid future clinical applications.
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