Publications by authors named "Farhat Din"

Article Synopsis
  • Common genetic variation at the 11q23.1 locus is linked to colorectal cancer risk, complicating the understanding of its mechanisms due to complex gene interactions and expression patterns.
  • The study utilizes various sequencing methods and mouse models to identify key genes, especially highlighting rs3087967 as a crucial variant that influences the expression of 21 genes associated with tuft cell markers.
  • The findings suggest that the risk genotype at rs3087967 leads to a deficiency in tuft cells, which are important for tumor suppression, positioning these cells as protective elements in colorectal cancer development.
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  • Lynch syndrome (LS) patients have a high risk of colorectal cancer, currently monitored through biennial colonoscopy, which can be burdensome and invasive.
  • This study assessed whether faecal immunochemical testing (FIT) for faecal haemoglobin could effectively replace the need for routine colonoscopy in LS surveillance.
  • Results showed FIT has low sensitivity for detecting adenomas, with no improvement when a second test was added, suggesting it may not be a viable alternative to colonoscopy.
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  • The study evaluated the non-return rate of faecal immunochemical tests among patients referred for high-risk colorectal cancer symptoms, finding that 11.9% of 7345 patients did not submit their tests.
  • Non-returners tended to be younger, predominantly male, and from lower socioeconomic backgrounds, and they exhibited different clinical outcomes compared to those who returned the test.
  • Despite a higher prevalence of colorectal cancer in those who underwent investigations, the overall cancer prevalence was similar between returners and non-returners over a median follow-up of 25 months, indicating potential issues in care access or follow-up for non-returners.
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  • Faecal immunochemical testing (FIT) is commonly used for detecting colorectal cancer (CRC) in screening programs, but the effectiveness of repeat tests to improve detection rates is still uncertain.
  • A systematic review analyzed 68 studies on the efficacy of double FIT tests compared to single tests, focusing on different patient populations (asymptomatic, mixed, symptomatic).
  • Results showed that using a second FIT test significantly increased the detection of CRC, with some studies noting a reduction in missed cases by at least 50%, and an estimated sensitivity of 94% for the double test in certain cohorts.
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Background: There is no consensus on optimal management of pilonidal disease. Surgical practice is varied, and existing literature is mainly single-centre cohort studies of varied disease severity, interventions and outcome assessments.

Objectives: A prospective cohort study to determine: • disease severity and intervention relationship • most valued outcomes and treatment preference by patients • recommendations for policy and future research.

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Aim: Pilonidal sinus disease is a common condition treated by colorectal surgeons. There is a lack of literature in the field to guide optimal management of this condition. As part of the PITSTOP study, we aimed to identify policy and research priorities to provide direction to the field.

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Article Synopsis
  • The study evaluates a four-part classification system for pilonidal disease proposed by the International Pilonidal Society (IPS) to establish its validity and reliability.
  • The researchers conducted assessments through systematic reviews, comparisons of patient-reported outcomes, and interrater reliability testing among different medical professionals using images from a cohort study.
  • Results indicate the IPS classification aligns with other classification systems and shows acceptable levels of agreement and predictive validity, suggesting it could be effectively implemented in clinical practice.
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  • This study investigates different surgical treatments for pilonidal disease, aiming to provide real-world data to enhance future treatment guidelines.
  • Conducted in the UK, it tracked 667 patients over 2.5 years, gathering information on pain, complications, and quality of life after surgery.
  • Results indicated that while minimally invasive surgery led to better recovery and fewer complications, it also carried a higher risk of treatment failure, highlighting the need for careful choice of surgical options.
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We aimed to develop and validate prediction models incorporating demographics, clinical features, and a weighted genetic risk score (wGRS) for individual prediction of colorectal cancer (CRC) risk in patients with gastroenterological symptoms. Prediction models were developed with internal validation [CRC Cases: n = 1686/Controls: n = 963]. Candidate predictors included age, sex, BMI, wGRS, family history, and symptoms (changes in bowel habits, rectal bleeding, weight loss, anaemia, abdominal pain).

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Article Synopsis
  • Colorectal cancer (CRC) has a genetic risk factor located at 11q23.1, which influences gene expression through eQTL mechanisms affecting both local (cis) and distant (trans) targets.* -
  • Analysis of 32,361 healthy colonic epithelial cells revealed a specific gene network linked to the expression of tuft cells, with one module showing significant correlation with the gene POU2AF2.* -
  • The study identified 12 trans-eQTL targets related to the 11q23.1 region, suggesting that these genes are associated with tuft cell abundance, where lower expression correlates with fewer tuft cells in the tissue.*
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Tumour cell plasticity is a major barrier to the efficacy of targeted cancer therapies but the mechanisms that mediate it are poorly understood. Here, we identify dysregulated RNA splicing as a key driver of tumour cell dedifferentiation in colorectal cancer (CRC). We find that Apc-deficient CRC cells have dysregulated RNA splicing machinery and exhibit global rewiring of RNA splicing.

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Colorectal cancer (CRC) is a common, multifactorial disease. While observational studies have identified an association between lower vitamin D and higher CRC risk, supplementation trials have been inconclusive and the mechanisms by which vitamin D may modulate CRC risk are not well understood. We sought to perform a weighted gene co-expression network analysis (WGCNA) to identify modules present after vitamin D supplementation (when plasma vitamin D level was sufficient) which were absent before supplementation, and then to identify influential genes in those modules.

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Vitamin D deficiency is associated with risk of several common cancers, including colorectal cancer (CRC). Here we have utilized patient derived epithelial organoids (ex vivo) and CRC cell lines (in vitro) to show that calcitriol (1,25OHD) increased the expression of the CRC tumor suppressor gene, CDH1, at both the transcript and protein level. Whole genome expression analysis demonstrated significant differential expression of a further six genes after 1,25OHD treatment, including genes with established links to carcinogenesis GADD45, EFTUD1 and KIAA1199.

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Objectives: A customised data management system was required for a rapidly implemented COVID-19-adapted colorectal cancer pathway in order to mitigate the risks of delayed and missed diagnoses during the pandemic. We assessed its performance and robustness.

Methods: A system was developed using Microsoft Excel (2007) to retain the spreadsheets' intuitiveness of direct data entry.

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Site-specific variation in colorectal cancer (CRC) incidence, biology and prognosis are poorly understood. We sought to determine whether common genetic variants influencing CRC risk might exhibit topographical differences on CRC risk through regional differences in effects on gene expression in the large bowel mucosa. We conducted a site-specific genetic association study (10 630 cases, 31 331 controls) to identify whether established risk variants exert differential effects on risk of proximal, compared to distal CRC.

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Current therapeutic options for treating colorectal cancer have little clinical efficacy and acquired resistance during treatment is common, even following patient stratification. Understanding the mechanisms that promote therapy resistance may lead to the development of novel therapeutic options that complement existing treatments and improve patient outcome. Here, we identify RAC1B as an important mediator of colorectal tumourigenesis and a potential target for enhancing the efficacy of EGFR inhibitor treatment.

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Aim: The dramatic curtailment of endoscopy and CT colonography capacity during the coronavirus pandemic has adversely impacted timely diagnosis of colorectal cancer (CRC). We describe a rapidly implemented COVID-adapted diagnostic pathway to mitigate risk and maximize cancer diagnosis in patients referred with symptoms of suspected CRC.

Method: The 'COVID-adapted pathway' integrated multiple quantitative faecal immunochemical tests (qFIT) to enrich for significant colorectal disease with judicious use of CT with oral contrast to detect gross pathology.

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Previous studies using additive genetic models failed to identify robust evidence of associations between colorectal cancer (CRC) risk variants and survival outcomes. However, additive models can be prone to false negative detection if the underlying inheritance mode is recessive. Here, we tested all currently known CRC-risk variants (n = 129) in a discovery analysis of 5675 patients from a Scottish cohort.

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Background & Aims: Aspirin reduces colorectal cancer (CRC) incidence and mortality. Understanding the biology responsible for this protective effect is key to developing biomarker-led approaches for rational clinical use. Wnt signaling drives CRC development from initiation to progression through regulation of epithelial-mesenchymal transition (EMT) and cancer stem cell populations.

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Background: Low circulating vitamin D levels are associated with poor colorectal cancer (CRC) survival. We assess whether vitamin D supplementation improves CRC survival outcomes.

Methods: PubMed and Web of Science were searched.

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Background: Germline genetic variants may influence pathways of tumor progression common to multiple cancer types. Here, we investigated the association between survival after colorectal cancer diagnosis and 128 common genetic variants previously associated with prognosis in genome-wide association studies in different cancer types.

Methods: We studied survival outcomes in a large well-documented, prospective, population-based cohort (5,675 patients with colorectal cancer) with up to 20 years' follow-up.

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