Publications by authors named "Fangxu Han"

The optimal timing of the transition from vegetative growth to reproductive growth is critical for plant reproductive success, and the underlying regulatory mechanisms have been well studied in angiosperm model species, but relatively little in gymnosperms. DAL1, a MADS domain transcription factor (TF) that shows a conserved age-related expression profile in conifers, may be an age timer. However, how DAL1 mediates the onset of reproductive growth remains poorly understood.

View Article and Find Full Text PDF

The proper response to various abiotic stresses is essential for plants' survival to overcome their sessile nature, especially for perennial trees with very long-life cycles. However, in conifers, the molecular mechanisms that coordinate multiple abiotic stress responses remain elusive. Here, the transcriptome response to various abiotic stresses like salt, cold, drought, heat shock and osmotic were systematically detected in () seedlings.

View Article and Find Full Text PDF

Epigenetics has been revealed to play a crucial role in the long-term memory in plants. However, little is known about whether the epigenetic modifications occur with age progressively in conifers. Here, we present the single-base resolution DNA methylation landscapes of the 25-gigabase Chinese pine (Pinus tabuliformis) genome at different ages.

View Article and Find Full Text PDF

More than 600 species of conifers (phylum Pinophyta) serve as the backbone of the Earth's terrestrial plant community and play key roles in global carbon and water cycles. Although coniferous forests account for a large fraction of global wood production, their productivity relies largely on the use of genetically improved seeds. However, acquisition of such seeds requires recurrent selection and testing of genetically superior parent trees, eventually followed by the establishment of a seed orchard to produce the improved seeds.

View Article and Find Full Text PDF
Article Synopsis
  • Pinus tabuliformis is a significant tree species in northern China, and its TCP transcription factors are crucial for understanding its adaptation to cold climates, but their specific functions remain unclear.
  • In this study, 43 TCP genes were identified in the P. tabuliformis genome and categorized into four groups based on evolutionary relationships, revealing distinct motifs and structural characteristics among these groups.
  • The findings suggest that certain TCP genes, especially from clade II, play a key role in regulating the tree's seasonal and circadian rhythms, with winter cold temperatures potentially influencing their diurnal expression patterns.
View Article and Find Full Text PDF
Article Synopsis
  • Conifers, particularly the Chinese pine, have large and complex genomes, which present challenges for creating comprehensive reference genomes for research.
  • A newly assembled 25.4-Gb genome revealed significant intergenic regions and long introns, indicating a high content of transposable elements and showing that larger genes were more highly expressed.
  • The study found extensive gene duplication linked to stress responses and identified unique reproductive mechanisms in conifers compared to flowering plants, providing valuable insights into their evolution and adaptation.
View Article and Find Full Text PDF
Article Synopsis
  • Age functions as a crucial physiological indicator for the developmental stages of organisms, with different aging pathways observed in gymnosperms and angiosperms.
  • The research identifies a specific protein, PtDAL1, that is essential for the transition from vegetative to reproductive stages in conifers, and it highlights its interactions with a variety of proteins that respond to environmental factors.
  • The study proposes a new model where PtDAL1 integrates environmental signals and regulates conifer development through its complex interactions with transcription factors, transcriptional regulators, and kinases.
View Article and Find Full Text PDF

Background: Seasonal flowering time is an ecologically and economically important trait in temperate trees. Previous studies have shown that temperature in many tree species plays a pivotal role in regulating flowering time. However, genetic control of flowering time is not synchronised in different individual trees under comparable temperature conditions, the underlying molecular mechanism is mainly to be investigated.

View Article and Find Full Text PDF

Gibberellin (GA) is known to play an important role in low red/far-red (R:FR) light ratio-mediated hypocotyl and petiole elongation in Arabidopsis (). However, the regulatory relationship between low R:FR and GAs remains unclear, especially in gymnosperms. To increase our understanding of the molecular basis of low R:FR-mediated shoot elongation in pines and to determine whether there is an association between low R:FR and GAs action, we explored the morphological and transcriptomic changes triggered by low R:FR, GAs, and paclobutrazol (PAC), a GAs biosynthesis inhibitor, in seedlings.

View Article and Find Full Text PDF

It has long been known that the pollen shedding time in pine trees is correlated with temperature, but the molecular basis for this has remained largely unknown. To better understand the mechanisms driving temperature response and to identify the hub regulators of pollen shedding time regulation in Pinus tabuliformis Carr., we identified a set of temperature-sensitive genes by carrying out a comparative transcriptome analysis using six early pollen shedding trees (EPs) and six late pollen shedding trees (LPs) during mid-winter and at three consecutive time points in early spring.

View Article and Find Full Text PDF