Publications by authors named "Fabrice Meriaudeau"

In real-world scenarios, medical image segmentation models encounter input images that may deviate from the training images in various ways. These differences can arise from changes in image scanners and acquisition protocols, or even the images can come from a different modality or domain. When the model encounters these out-of-distribution (OOD) images, it can behave unpredictably.

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  • Large datasets of fundus images for eye diseases have been collected to train deep learning models for diagnosing common conditions like diabetic retinopathy, but many systems overlook rare, sight-threatening diseases.
  • A grand challenge called "Retinal Image Analysis for multi-Disease Detection" was held at the IEEE International Symposium on Biomedical Imaging to enhance automatic detection for both common and rare eye diseases, using a new dataset called RFMiD.
  • The challenge attracted significant interest, with 74 submissions, and the best solutions combined techniques like data-preprocessing, augmentation, and model ensembling to improve detection capabilities across a wider range of ocular diseases.
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Blindness is preventable by early detection of ocular abnormalities. Computer-aided diagnosis for ocular abnormalities is built by analyzing retinal imaging modalities, for instance, Color Fundus Photography (CFP). This research aims to propose a multi-label detection of 28 ocular abnormalities consisting of frequent and rare abnormalities from a single CFP by using transformer-based semantic dictionary learning.

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In medical imaging, accurate segmentation is crucial to improving diagnosis, treatment, or both. However, navigating the multitude of available architectures for automatic segmentation can be overwhelming, making it challenging to determine the appropriate type of architecture and tune the most crucial parameters during dataset optimisation. To address this problem, we examined and refined seven distinct architectures for segmenting the liver, as well as liver tumours, with a restricted training collection of 60 3D contrast-enhanced magnetic resonance images (CE-MRI) from the ATLAS dataset.

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Fetoscopy laser photocoagulation is a widely adopted procedure for treating Twin-to-Twin Transfusion Syndrome (TTTS). The procedure involves photocoagulation pathological anastomoses to restore a physiological blood exchange among twins. The procedure is particularly challenging, from the surgeon's side, due to the limited field of view, poor manoeuvrability of the fetoscope, poor visibility due to amniotic fluid turbidity, and variability in illumination.

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  • * A deep learning-based method is proposed for estimating these channels using convolutional neural networks to detect clusters, outperforming traditional methods, especially in low signal-to-noise scenarios.
  • * The approach integrates cluster detection with compressed sensing techniques to minimize errors and improve accuracy, supported by simulation and sea trial results showing its superiority over existing methods.
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RGB-D saliency detection aims to fuse multi-modal cues to accurately localize salient regions. Existing works often adopt attention modules for feature modeling, with few methods explicitly leveraging fine-grained details to merge with semantic cues. Thus, despite the auxiliary depth information, it is still challenging for existing models to distinguish objects with similar appearances but at distinct camera distances.

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Deep learning-based methods for cardiac MR segmentation have achieved state-of-the-art results. However, these methods can generate incorrect segmentation results which can lead to wrong clinical decisions in the downstream tasks. Automatic and accurate analysis of downstream tasks, such as myocardial tissue characterization, is highly dependent on the quality of the segmentation results.

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The healthcare burden of cardiovascular diseases remains a major issue worldwide. Understanding the underlying mechanisms and improving identification of people with a higher risk profile of systemic vascular disease through noninvasive examinations is crucial. In ophthalmology, retinal vascular network imaging is simple and noninvasive and can provide in vivo information of the microstructure and vascular health.

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Specular highlights detection and removal in images is a fundamental yet non-trivial problem of interest. Most modern techniques proposed are inadequate at dealing with real-world images taken under uncontrolled conditions with the presence of complex textures, multiple objects, and bright colours, resulting in reduced accuracy and false positives. To detect specular pixels in a wide variety of real-world images independent of the number, colour, or type of illuminating source, we propose an efficient Specular Segmentation (SpecSeg) network based on the U-net architecture that is expeditious to train on nominal-sized datasets.

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In this paper, a data augmentation aided complex-valued network is proposed for underwater acoustic (UWA) orthogonal frequency division multiplexing (OFDM) channel estimations, wherein empirical mode decomposition based data augmentation is proposed to solve the current dilemma in the deep learning embedded UWA-OFDM communications: data scarcity and data-sampling difficulties in real-world applications. In addition, the significance of high-frequency component augmentation for the UWA channel and how it positively influences the following model training are discussed in detail and demonstrated experimentally in this paper. In addition, the complex-valued network is specially designed for the complex-formatted UWA-OFDM signal, which can fully utilize the relationship between its real and imaginary parts with half of the spatial resources of its real-valued counterparts.

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Present architecture of convolution neural network for diabetic retinopathy (DR-Net) is based on normal convolution (NC). It incurs high computational cost as NC uses a multiplicative weight that measures a combined correlation in both cross-channel and spatial dimension of layer's inputs. This might cause the overall DR-Net architecture to be over-parameterised and computationally inefficient.

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Infection by the SARS-CoV-2 leading to COVID-19 disease is still rising and techniques to either diagnose or evaluate the disease are still thoroughly investigated. The use of CT as a complementary tool to other biological tests is still under scrutiny as the CT scans are prone to many false positives as other lung diseases display similar characteristics on CT scans. However, fully investigating CT images is of tremendous interest to better understand the disease progression and therefore thousands of scans need to be segmented by radiologists to study infected areas.

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  • A key method for evaluating heart health after a heart attack (myocardial infarction) is using delayed enhancement MRI (DE-MRI), which identifies viable versus nonviable heart tissue effectively.
  • The EMIDEC challenge aimed to assess whether deep learning techniques could differentiate between healthy and pathological heart exams, and also to automatically calculate the extent of myocardial injury using a dataset of 150 MRI cases.
  • Results showed that high accuracy (up to 0.92) in classifying heart exams is achievable, but improvements are needed for accurately segmenting the affected areas due to their small size and low contrast with surrounding tissues.
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Accurate segmentation of the myocardial scar may supply relevant advancements in predicting and controlling deadly ventricular arrhythmias in subjects with cardiovascular disease. In this paper, we propose the architecture of inclusion and classification of prior information U-Net (ICPIU-Net) to efficiently segment the left ventricle (LV) myocardium, myocardial infarction (MI), and microvascular-obstructed (MVO) tissues from late gadolinium enhancement magnetic resonance (LGE-MR) images. Our approach was developed using two subnets cascaded to first segment the LV cavity and myocardium.

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Glaucoma is an ocular disease threatening irreversible vision loss. Primary screening of Glaucoma involves computation of optic cup (OC) to optic disc (OD) ratio that is widely accepted metric. Recent deep learning frameworks for OD and OC segmentation have shown promising results and ways to attain remarkable performance.

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In this paper, a meta-learning-based underwater acoustic (UWA) orthogonal frequency division multiplexing (OFDM) system is proposed to deal with the environment mismatch in real-world UWA applications, which can effectively drive the model from the given UWA environment to the new UWA environment with a relatively small amount of data. With meta-learning, we consider multiple UWA environments as multi-UWA-tasks, wherein the meta-training strategy is utilized to learn a robust model from previously observed multi-UWA-tasks, and it can be quickly adapted to the unknown UWA environment with only a small number of updates. The experiments with the at-sea-measured WATERMARK dataset and the lake trial indicate that, compared with the traditional UWA-OFDM system and the conventional machine learning-based framework, the proposed method shows better bit error rate performance and stronger learning ability under various UWA scenarios.

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This work reports the use of a ternary composite that integrates p-Toluene sulfonic acid doped polyaniline (PANI), chitosan, and reduced graphene oxide (RGO) as the active sensing layer of a surface plasmon resonance (SPR) sensor. The SPR sensor is intended for application in the non-invasive monitoring and screening of diabetes through the detection of low concentrations of acetone vapour of less than or equal to 5 ppm, which falls within the range of breath acetone concentration in diabetic patients. The ternary composite film was spin-coated on a 50-nm-thick gold layer at 6000 rpm for 30 s.

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To non-invasively monitor and screen for diabetes in patients, there is need to detect low concentration of acetone vapor in the range from 1.8 ppm to 5 ppm, which is the concentration range of acetone vapor in diabetic patients. This work presents an investigation for the utilization of chitosan-polyethylene glycol (PEG)-based surface plasmon resonance (SPR) sensor in the detection of trace concentration acetone vapor in the range of breath acetone in diabetic subjects.

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Automatic segmentation on computed tomography images of kidney and liver tumors remains a challenging task due to heterogeneity and variation in shapes. Recently, two-dimensional (2D) and three-dimensional (3D) deep convolutional neural networks have become popular in medical image segmentation tasks because they can leverage large labeled datasets, thus enabling them to learn hierarchical features. However, 3D networks have some drawbacks due to their high cost of computational resources.

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The deterioration of the retina center could be the main reason for vision loss. Older people usually ranging from 50 years and above are exposed to age-related macular degeneration (AMD) disease that strikes the retina. The lack of human expertise to interpret the complexity in diagnosing diseases leads to the importance of developing an accurate method to detect and localize the targeted infection.

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The optical constants of Para-Toluene sulfonic acid-doped polyaniline (PANI), PANIchitosan composites, PANI-reduced graphene-oxide composites and a ternary composite comprising of PANI, chitosan and reduced graphene-oxide dispersed in diluted p-toluene sulfonic acid (PTSA) solution and -Methyl-2-Pyrrolidone (NMP) solvent have been evaluated and compared. The optical constant values were extracted from the absorbance spectra of thin layers of the respective samples. The potential utilization of the materials as the active sensing materials of surface plasmon resonance biosensors has also been assessed in terms of the estimated value of the penetration depth through a dielectric medium.

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Neurological disorders such as cerebral paralysis, spinal cord injuries, and strokes, result in the impairment of motor control and induce functional difficulties to human beings like walking, standing, etc. Physical injuries due to accidents and muscular weaknesses caused by aging affect people and can cause them to lose their ability to perform daily routine functions. In order to help people recover or improve their dysfunctional activities and quality of life after accidents or strokes, assistive devices like exoskeletons and orthoses are developed.

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In this paper, we present an evaluation of four encoder-decoder CNNs in the segmentation of the prostate gland in T2W magnetic resonance imaging (MRI) image. The four selected CNNs are FCN, SegNet, U-Net, and DeepLabV3+, which was originally proposed for the segmentation of road scene, biomedical, and natural images. Segmentation of prostate in T2W MRI images is an important step in the automatic diagnosis of prostate cancer to enable better lesion detection and staging of prostate cancer.

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Diabetic Retinopathy (DR) is the most common cause of avoidable vision loss, predominantly affecting the working-age population across the globe. Screening for DR, coupled with timely consultation and treatment, is a globally trusted policy to avoid vision loss. However, implementation of DR screening programs is challenging due to the scarcity of medical professionals able to screen a growing global diabetic population at risk for DR.

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