Publications by authors named "Fabian Bernal"

Article Synopsis
  • - The study aimed to harmonize Norwegian health registries onto the OMOP common data model, incorporating a wealth of real-world data into a format that can support research and emergency preparedness related to COVID-19.
  • - Researchers successfully mapped 1.5 billion rows of health data from multiple registries, revealing detailed demographics and a significant number of COVID-19 cases, while ensuring most data quality checks passed with high accuracy.
  • - The successful integration of this health data enhances the potential for collaborative research on COVID-19 and demonstrates a valuable methodology for similar health registries in the Nordic region.
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Large quantities of high-purity NHCrF have been synthesized using a wet-chemical method, and its structural chemistry and magnetic properties are investigated in detail for the first time. NHCrF is a tetragonal fluoroperovskite that displays an ordering of the ammonium (NH) groups at room temperature and C-type orbital ordering. The ammonium groups order and display distinct signs of hydrogen bonds to nearby fluoride anions by buckling the Cr-F-Cr angle away from 180°.

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Genome-scale screening experiments in cancer produce long lists of candidate genes that require extensive interpretation for biological insight and prioritization for follow-up studies. Interrogation of gene lists frequently represents a significant and time-consuming undertaking, in which experimental biologists typically combine results from a variety of bioinformatics resources in an attempt to portray and understand cancer relevance. As a means to simplify and strengthen the support for this endeavor, we have developed oncoEnrichR, a flexible bioinformatics tool that allows cancer researchers to comprehensively interrogate a given gene list along multiple facets of cancer relevance.

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Article Synopsis
  • AIRR (Adaptive Immune Receptor Repertoires) are crucial for tracking immune responses, making them important in biomedical research.
  • Machine learning (ML) is useful for analyzing complex patterns in AIRR, but issues like reproducibility and transparency have slowed its adoption.
  • immuneML is a new open-source tool that simplifies the AIRR ML process and includes user-friendly interfaces, extensive documentation, and demonstrates its effectiveness through various applications in immune state prediction and antigen specificity.
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The GdFeO3-type perovskite NaFeF3 transforms to CaIrO3-type postperovskite at pressures as low as 9 GPa at room temperature. The details of such a transition were investigated by in situ synchrotron powder diffraction in a multianvil press. Fit of the p-V data showed that the perovskite phase is more compressible than related chemistries with a strongly anisotropic response of the lattice metrics to increasing pressure.

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Article Synopsis
  • Human cerebral calcification is linked to problems with calcium balance inside cells, impacting neurodegenerative processes.
  • In experiments with rats, AMPA caused lesions and calcification in the hippocampus, showing that calcium antagonists like nimodipine and TMB-8 have differing effects on these damages.
  • Nimodipine can reverse the calcification caused by TMB-8, highlighting distinct calcium movement mechanisms in different brain regions, suggesting that further research is needed to explore calcium's role in neurodegenerative diseases.
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Matrix metalloproteinases (MMPs) comprise a large family of endopeptidases that are capable of degrading all extracellular matrix components. There is increasing evidence that MMPs are not only involved in tissue destruction but may also exert beneficial effects during axonal regeneration and nerve remyelination. Here, we provide evidence that MMP-2 (gelatinase A) is associated with the physiological process of myelination in the peripheral nervous system (PNS).

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Cellular microcalcification observed in a diversity of human pathologies, such as vascular dementia, Alzheimer's disease, Parkinson's disease, astrogliomas, and posttraumatic epilepsy, also develops in rodent experimental models of central nervous system (CNS) neurodegeneration. Central to the neurodegenerative process is the inability of neurons to regulate intracellular calcium levels properly, and this is extensible to fine regulation of the CNS. This study provides evidence of a common pattern of brain calcification taking place in several human pathologies, and in the rat with glutamate-derived CNS lesions, regarding the chemical composition, physical characteristics, and histological environment of the precipitates.

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Matrix metalloproteinases (MMPs) comprise a large group of endoproteinases that degrade all protein components of the extracellular matrix. Functionally, MMPs contribute to several different physiological as well as pathological conditions. The number of newly described MMPs has increased in recent years, although current knowledge about their expression pattern in various tissues remains incomplete.

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Astroglial participation in the regional differences of vulnerability to alpha-amino-3-hydroxy-5-methylisoxazole-4-propionic acid (AMPA)-induced neurodegeneration was investigated in the rat hippocampus and medial septum using L-alpha-aminoadipate (alpha-AA) as a specific astroglial toxin. alpha-AA was microinjected in the hippocampus and the medial septum and a time-course study was carried out between 2 hr and 3 days. When compared to controls, microinjection of alpha-AA in the hippocampus induced within 3 days a reversible loss of glial fibrillary acidic protein (GFAP) immunostaining and a microglial reaction without any neuronal loss, whereas in the medial septum it caused no effects on astroglial, microglial, or neuronal populations.

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Acute injection of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate (AMPA) into the rat globus pallidus leads to calcium precipitation, neuronal death and gliosis. In order to determine whether L-type calcium channels and/or release of Ca(2+) from intracellular stores contribute to the effects of AMPA, nimodipine and 8-(N,N-diethylamino) octyl-3,4,5-trimethoxybenzoate hydrochloride (TMB-8) were administered in combination with AMPA. Nimodipine, but not TMB-8, tended to exacerbate the calcification process initiated by AMPA; the AMPA/nimodipine/TMB-8 combination produced much more calcium deposition than AMPA (+62%, P<0.

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The precise immune mechanisms of neuronal death in anti-Hu-associated paraneoplastic encephalomyelitis (PEM) are unclear. We performed an immunohistochemical study on postmortem brain tissue from 11 patients with anti-Hu-associated PEM to further characterize the immune reaction and to ascertain possible mechanisms of neuronal death. To analyze inflammatory infiltrates, antibodies against lymphocyte subpopulations (CD3, CD20, CD4, CD8), macrophage and activated microglia (CD68), major histocompatibility complex (MHC) classes I and II (HLA-ABC and HLA-DR), and the intercellular adhesion molecules (ICAM) -1 and -3 were used.

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