Publications by authors named "FERRARIS R"

The human gut microbiome plays a crucial role in regulating intestinal and systemic health, impacting host immune response and metabolic function. Dysbiosis of the gut microbiome is linked to various diseases, including steatotic liver diseases. Metabolic dysfunction-associated steatotic liver disease (MASLD), a chronic liver disease characterized by excess hepatic lipid content and impaired metabolism, is the leading cause of liver disease worldwide.

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Ruminococcus gnavus is a mucolytic commensal bacterium whose increased gut colonization has been associated with chronic inflammatory and metabolic diseases in humans. Whether R. gnavus metabolites can modulate host intestinal physiology remains largely understudied.

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Lysozyme is a β-1,4-glycosidase that hydrolyzes the polysaccharide backbone of bacterial cell walls. With an additional bactericidal function mediated by a separate protein domain, lysozyme is considered a uniquely important antimicrobial molecule contributing to the host's innate immune response to infection. Elevated lysozyme production is found in various inflammatory conditions while patients with genetic risks for inflammatory bowel diseases demonstrate abnormal lysozyme expression, granule packaging, and secretion in Paneth cells.

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Background & Aims: Lacticaseibacillus rhamnosus GG (LGG) is the world's most consumed probiotic but its mechanism of action on intestinal permeability and differentiation along with its interactions with an essential source of signaling metabolites, dietary tryptophan (trp), are unclear.

Methods: Untargeted metabolomic and transcriptomic analyses were performed in LGG monocolonized germ-free mice fed trp-free or -sufficient diets. LGG-derived metabolites were profiled in vitro under anaerobic and aerobic conditions.

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Aim: The analyses here reported aim to compare the screening performance of digital tomosynthesis (DBT) versus mammography (DM).

Methods: MAITA is a consortium of four Italian trials, REtomo, Proteus, Impeto, and MAITA trial. The trials adopted a two-arm randomised design comparing DBT plus DM (REtomo and Proteus) or synthetic-2D (Impeto and MAITA trial) versus DM; multiple vendors were included.

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Article Synopsis
  • The study explores how the intestinal microbiota influences susceptibility to obesity, particularly focusing on the probiotic Lacticaseibacillus rhamnosus GG (LGG) and its relationship with tryptophan (trp) in diet-induced weight gain.
  • Researchers used germ-free mice to investigate the effects of LGG in trp-free and trp-sufficient diets, finding that LGG enhances fatty acid metabolism and β-oxidation when trp is present.
  • Utilizing advanced techniques like metabolomics and RNA sequencing, the study developed a correlation analysis tool to identify metabolites related to LGG and trp that influence metabolic gene expression, paving the way for future research on microbiota interactions.
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Paneth cells (PCs), a specialized secretory cell type in the small intestine, are increasingly recognized as having an essential role in host responses to microbiome and environmental stresses. Whether and how commensal and pathogenic microbes modify PC composition to modulate inflammation remain unclear. Using newly developed PC-reporter mice under conventional and gnotobiotic conditions, we determined PC transcriptomic heterogeneity in response to commensal and invasive microbes at single cell level.

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Background: Mini-invasive surgery (MIS), ERAS, and preoperative nutritional screening are currently used to reduce complications and the length of hospital stay (LOS); however, inter-variable correlations have seldom been explored. This research aimed to define inter-variable correlations in a large series of patients with gastrointestinal cancer and their impact on outcomes.

Methods: Patients with consecutive cancer who underwent radical gastrointestinal surgery between 2019 and 2020 were analyzed.

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  • This study investigates the effects of allulose, a rare sugar, on the small intestine's health, finding that it alters many more genes compared to fructose and glucose.
  • Pathway analysis shows that allulose significantly upregulates functions related to nutrient transport and metabolism, suggesting it enhances these processes in the intestine.
  • Allulose also helps restore gut structure and function in rats after total parenteral nutrition (TPN) by improving the expression of important proteins and increasing secretion of glucagon-like peptide-2 (GLP-2), potentially protecting against gut health issues linked to metabolic diseases.
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Angiotensin-converting enzyme 2 (ACE2) and transmembrane proteases (TMPRSS) are multifunctional proteins required for SARS-CoV-2 infection or for amino acid (AA) transport, and are abundantly expressed in mammalian small intestine, but the identity of the intestinal cell type(s) and sites of expression are unclear. Here we determined expression of SARS-CoV-2 entry factors in different cell types and then compared it to that of representative AA, electrolyte, and mineral transporters. We tested the hypothesis that SARS-CoV-2, AA, electrolyte, and mineral transporters are expressed heterogeneously in different intestinal cell types by making mouse enteroids enriched in enterocytes (ENT), goblet (GOB), Paneth (PAN), or stem (ISC) cells.

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Oriental herbal medicine with the two bioactive constituents, β-eudesmol (BE) and atractylodin (AT), has been used as a remedy for gastrointestinal disorders. There was no scientific evidence reporting their antidiarrheal effect and underpinning mechanisms. Therefore, we aimed to investigate the anti-secretory activity of these two compounds in vitro.

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Background: Lactobacillus rhamnosus GG (LGG) is the most widely used probiotic, but the mechanisms underlying its beneficial effects remain unresolved. Previous studies typically inoculated LGG in hosts with established gut microbiota, limiting the understanding of specific impacts of LGG on host due to numerous interactions among LGG, commensal microbes, and the host. There has been a scarcity of studies that used gnotobiotic animals to elucidate LGG-host interaction, in particular for gaining specific insights about how it modifies the metabolome.

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Article Synopsis
  • The current environmental changes are impacting Earth's biological systems, highlighting the need for an integrated study to reveal unexpected interactions between microbes and larger ecological phenomena.
  • Understanding these interactions is crucial for grasping connections like how deforestation relates to emerging diseases, the relationship between ecosystem disturbances and gut microbiomes, and the effects of pollutants across different scales.
  • Existing techniques and data can address these questions, but coordinated efforts across various disciplines are essential to maximize their effectiveness.
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Background: Symptoms following fructose ingestion, or fructose intolerance, are common in patients with functional gastrointestinal disorders (FGID) and are generally attributed to intestinal malabsorption. The relationships between absorption, symptoms, and intestinal gas production following fructose ingestion were studied in patients with FGID.

Methods: Thirty FGID patients ingested a single dose of fructose 35 g or water in a randomized, double-blind, crossover study.

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  • - Paneth cells produce C-type lysozyme, which helps break down bacterial cell walls and are typically found in the cecum and ascending colon, with their absence in regions like the descending colon linked to inflammatory bowel disease (IBD).
  • - Research showed that disrupting Paneth cell lysozyme in mice protected them from colitis, reduced their immune responses to bacteria, and allowed the growth of certain bacteria associated with Crohn's disease.
  • - The production and presence of lysozyme have a significant role in managing inflammation in the gut, suggesting that its balance is crucial for preventing IBD-related complications.
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The regulatory mechanisms enabling the intestinal epithelium to maintain a high degree of regenerative capacity during mucosal injury remain unclear. Ex vivo survival and clonogenicity of intestinal stem cells (ISCs) strictly required growth response mediated by cell division control 42 (Cdc42) and Cdc42-deficient enteroids to undergo rapid apoptosis. Mechanistically, Cdc42 engaging with EGFR was required for EGF-stimulated, receptor-mediated endocytosis and sufficient to promote MAPK signaling.

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  • High fructose intake is linked to metabolic diseases, particularly affecting lipid metabolism in the small intestine, but the specific cell types involved remained unclear.
  • The study investigated how fructose influences the expression of lipid-related genes, focusing on the role of the fructose transporter Slc2a5 and ketohexokinase, assuming this effect occurs primarily in enterocytes.
  • Results showed that enterocytes increased lipogenic gene expression significantly in response to fructose, while this effect was not observed in mice lacking Slc2a5 or Khk, indicating these components are crucial for the process.
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  • Fructose is metabolized by ketohexokinase (KHK), and excessive intake could negatively impact bone health, as shown in mice with calcium restriction.
  • A study used KHK knockout mice to test the effects of high plasma fructose on bone length and density; KHK-KO mice had a 40-fold increase in plasma fructose compared to others.
  • Despite shorter femurs in KHK-KO mice, increased plasma fructose correlated with greater bone mineral density and strength, suggesting that high fructose levels directly influence bone growth.
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The effects of polarized membrane trafficking in mature epithelial tissue on cell growth and cancer progression have not been fully explored . A majority of colorectal cancers have reduced and mislocalized Rab11, a small GTPase dedicated to trafficking of recycling endosomes. Patients with low Rab11 protein expression have poor survival rates.

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  • High fructose consumption can exceed the intestine's ability to absorb it, leading to malabsorption.
  • In a study using mice models, moderate fructose malabsorption resulted in increased expression of hormones like cholecystokinin (CCK) and changes in microbiota composition.
  • The altered microbiota and its metabolites, especially propionate, play a significant role in stimulating hormone production in the intestines due to the impact of undigested fructose.
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The survival rates of patients with metastatic colorectal cancer (mCRC) have improved in recent years. We analysed the survival of mCRC patients followed at a single institution over the last 17 years. We retrospectively collected data from 899 mCRC patients treated from 2001 to 2016.

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Commensal bacteria influence host physiology, without invading host tissues. We show that proteins from segmented filamentous bacteria (SFB) are transferred into intestinal epithelial cells (IECs) through adhesion-directed endocytosis that is distinct from the clathrin-dependent endocytosis of invasive pathogens. This process transfers microbial cell wall-associated proteins, including an antigen that stimulates mucosal T helper 17 (T17) cell differentiation, into the cytosol of IECs in a cell division control protein 42 homolog (CDC42)-dependent manner.

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d-Allulose has been reported to have beneficial health effects. However, the transport system(s) mediating intestinal d-allulose transport has not yet been clearly identified. The aim of this study was to investigate whether intestinal d-allulose transport is mediated by glucose transporter type 5 (GLUT5).

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Paneth cells are post-mitotic intestinal epithelial cells supporting the stem cell niche and mucosal immunity. Paneth cell pathologies are observed in various gastrointestinal diseases, but their plasticity and response to genomic and environmental challenges remain unclear. Using a knockin allele engineered at the mouse Lyz1 locus, we performed detailed Paneth cell-lineage tracing.

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Increased understanding of fructose metabolism, which begins with uptake via the intestine, is important because fructose now constitutes a physiologically significant portion of human diets and is associated with increased incidence of certain cancers and metabolic diseases. New insights in our knowledge of intestinal fructose absorption mediated by the facilitative glucose transporter GLUT5 in the apical membrane and by GLUT2 in the basolateral membrane are reviewed. We begin with studies related to structure as well as ligand binding, then revisit the controversial proposition that apical GLUT2 is the main mediator of intestinal fructose absorption.

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