Streamlined and efficient genome editing in Cupriavidus necator H16 using an optimised SIBR-Cas system.

Cupriavidus necator H16 is a promising microbial platform strain for CO valorisation. While C. necator is amenable to genome editing, existing tools are often inefficient or rely on lengthy protocols, hindering its rapid transition to industrial applications.

Synergistic effects of distinct arabinofuranosidase specificities in lignocellulose degradation by different hemicellulases.

Arabinoxylan is a prevalent hemicellulose type, notably heterogeneous and resistant to biodegradation. Arabinofuranosidases (Abfs) remove arabinofuranosyl decorations of arabinoxylan, thus enabling hydrolysis by xylanases. However, a variety of Abf and xylanase specificities have emerged in recent years, necessitating a deeper understanding of their role in biomass degradation.

Structural and molecular insights into a bifunctional glycoside hydrolase 30 xylanase specific to glucuronoxylan.

Glycoside hydrolase (GH) 30 family xylanases are enzymes of biotechnological interest due to their capacity to degrade recalcitrant hemicelluloses, such as glucuronoxylan (GX). This study focuses on a subfamily 7 GH30, TtXyn30A from Thermothelomyces thermophilus, which acts on GX in an "endo" and "exo" mode, releasing methyl-glucuronic acid branched xylooligosaccharides (XOs) and xylobiose, respectively. The crystal structure of inactive TtXyn30A in complex with 2-(4-O-methyl-α-D-glucuronosyl)-xylotriose (UXX), along with biochemical analyses, corroborate the implication of E233, previously identified as alternative catalytic residue, in the hydrolysis of decorated xylan.

Speech emotion recognition via graph-based representations.

Speech emotion recognition (SER) has gained an increased interest during the last decades as part of enriched affective computing. As a consequence, a variety of engineering approaches have been developed addressing the challenge of the SER problem, exploiting different features, learning algorithms, and datasets. In this paper, we propose the application of the graph theory for classifying emotionally-colored speech signals.

The role of CE16 exo-deacetylases in hemicellulolytic enzyme mixtures revealed by the biochemical and structural study of the novel TtCE16B esterase.

Acetyl esterases belonging to the carbohydrate esterase family 16 (CE16) is a growing group of enzymes, with exceptional diversity regarding substrate specificity and regioselectivity. However, further insight into the CE16 specificity is required for their efficient biotechnological exploitation. In this work, exo-deacetylase TtCE16B from Thermothelomyces thermophila was heterologously expressed and biochemically characterized.

Using the recurrence plots as indicators for the recognition of Parkinson's disease through phonemes assessment.

Parkinson's disease (PD) is considered to be the second most common neurodegenerative disease which affects the patients' life throughout the years. As a consequence, its early diagnosis is of major importance for the improvement of life quality, implying that the severe symptoms can be delayed through appropriate clinical intervention and treatment. Among the most important premature symptoms of PD are the voice impairments of articulation, phonation and prosody.

Altered hippocampal connectivity dynamics predicts memory performance in neuropsychiatric lupus: a resting-state fMRI study using cross-recurrence quantification analysis.

Objective: Τo determine whole-brain and regional functional connectivity (FC) characteristics of patients with neuropsychiatric SLE (NPSLE) or without neuropsychiatric manifestations (non-NPSLE) and examine their association with cognitive performance.

Methods: Cross-recurrence quantification analysis (CRQA) of resting-state functional MRI (rs-fMRI) data was performed in 44 patients with NPSLE, 20 patients without NPSLE and 35 healthy controls (HCs). Volumetric analysis of total brain and specific cortical and subcortical regions, where significant connectivity changes were identified, was performed.

Multi-Modal Deep Learning Diagnosis of Parkinson's Disease-A Systematic Review.

Parkinson's Disease (PD) is among the most frequent neurological disorders. Approaches that employ artificial intelligence and notably deep learning, have been extensively embraced with promising outcomes. This study dispenses an exhaustive review between 2016 and January 2023 on deep learning techniques used in the prognosis and evolution of symptoms and characteristics of the disease based on gait, upper limb movement, speech and facial expression-related information as well as the fusion of more than one of the aforementioned modalities.

The xylobiohydrolase activity of a GH30 xylanase on natively acetylated xylan may hold the key for the degradation of recalcitrant xylan.

Acetyl substitutions are common on the hemicellulosic structures of lignocellulose, which up until recently were known to inhibit xylanase activity. Emerging data, however, suggest that xylanases are able to accommodate acetyl side-groups within their catalytic site. In the present work, a fungal GH30 xylanase from Thermothelomyces thermophila, namely TtXyn30A, was shown to release acetylated xylobiose when acting on pretreated lignocellulosic substrate.

Recent advances on key enzymatic activities for the utilisation of lignocellulosic biomass.

The field of enzymatic degradation of lignocellulose is actively growing and the recent updates of the last few years indicate that there is still much to learn. The growing number of protein sequences with unknown function in microbial genomes indicates that there is still much to learn on the mechanisms of lignocellulose degradation. In this review, a summary of the progress in the field is presented, including recent discoveries on the nature of the structural polysaccharides, new technologies for the discovery and functional annotation of gene sequences including omics technologies, and the novel lignocellulose-acting enzymes described.

Unique features of the bifunctional GH30 from Thermothelomyces thermophila revealed by structural and mutational studies.

Fungal xylanases belonging to family GH30_7, initially categorized as endo-glucuronoxylanases, are now known to differ both in terms of substrate specificity, as well as mode of action. Recently, TtXyn30A, a GH30_7 xylanase from Thermothelomyces thermophila, was shown to possess dual activity, acting on the xylan backbone in both an endo- and an exo- manner. Here, in an effort to identify the structural characteristics that append these functional properties to the enzyme, we present the biochemical characterization of various TtXyn30A mutants as well as its crystal structure, alone, and in complex with the reaction product.

Discovery of two novel laccase-like multicopper oxidases from Pleurotus citrinopileatus and their application in phenolic oligomer synthesis.

Background: Laccases and laccase-like multicopper oxidases (LMCOs) oxidize a vast array of phenolic compounds and amines, releasing water as a byproduct. Their low substrate specificity is responsible for their tremendous biotechnological interest, since they have been used for numerous applications. However, the laccases characterized so far correspond to only a small fraction of the laccase genes identified in fungal genomes.

A new synergistic relationship between xylan-active LPMO and xylobiohydrolase to tackle recalcitrant xylan.

Background: Hemicellulose accounts for a significant part of plant biomass, and still poses a barrier to the efficient saccharification of lignocellulose. The recalcitrant part of hemicellulose is a serious impediment to the action of cellulases, despite the use of xylanases in the cellulolytic cocktail mixtures. However, the complexity and variety of hemicelluloses in different plant materials require the use of highly specific enzymes for a complete breakdown.

Complex Electrical Conductivity of Biotite and Muscovite Micas at Elevated Temperatures: A Comparative Study.

The unique physicochemical, electrical, mechanical, and thermal properties of micas make them suitable for a wide range of industrial applications, and thus, the interest for these kind of hydrous aluminosilicate minerals is still persistent, not only from a practical but also from a scientific point of view. In the present work, complex impedance spectroscopy measurements were carried out in muscovite and biotite micas, perpendicular to their cleavage planes, over a broad range of frequencies (10 Hz to 10 Hz) and temperatures (473-1173 K) that have not been measured so far. Different formalisms of data representation were used, namely, Cole-Cole plots of complex impedance, complex electrical conductivity and electric modulus to analyze the electrical behavior of micas and the electrical signatures of the dehydration/dehydroxylation processes.

Accuracy of dynamic contour tonometry, Goldmann applanation tonometry, and Tono-Pen XL in edematous corneas.

Purpose: To investigate the accuracy of dynamic contour tonometry, Goldmann applanation tonometry, and Tono-Pen XL in edematous corneas.

Methods: Experimental study included 20 freshly enucleated porcine eyes. Epithelium was debrided, and eyes were divided in four groups.

Crosslinked Enzyme Aggregates (CLEAs) of Laccases from Induced in Olive Oil Mill Wastewater (OOMW).

The enzymatic factory of ligninolytic fungi has proven to be a powerful tool in applications regarding the degradation of various types of pollutants. The degradative potential of fungi is mainly due to the production of different types of oxidases, of which laccases is one of the most prominent enzymatic activities. In the present work, crude laccases from the supernatant of cultures grown in olive oil mill wastewater (OOMW) were immobilized in crosslinked enzyme aggregates (CLEAs), aiming at the development of biocatalysts suitable for the enzymatic treatment of OOMW.

Classification of Compressed Remote Sensing Multispectral Images via Convolutional Neural Networks.

Multispectral sensors constitute a core Earth observation image technology generating massive high-dimensional observations. To address the communication and storage constraints of remote sensing platforms, lossy data compression becomes necessary, but it unavoidably introduces unwanted artifacts. In this work, we consider the encoding of multispectral observations into high-order tensor structures which can naturally capture multi-dimensional dependencies and correlations, and we propose a resource-efficient compression scheme based on quantized low-rank tensor completion.

Survey of Deep-Learning Approaches for Remote Sensing Observation Enhancement.

Deep Learning, and Deep Neural Networks in particular, have established themselves as the new norm in signal and data processing, achieving state-of-the-art performance in image, audio, and natural language understanding. In remote sensing, a large body of research has been devoted to the application of deep learning for typical supervised learning tasks such as classification. Less yet equally important effort has also been allocated to addressing the challenges associated with the enhancement of low-quality observations from remote sensing platforms.

In vitro effect of corneal collagen cross-linking on corneal hydration properties and stiffness.

Background: The purpose of this study is to evaluate in-vitro the immediate effect of corneal collagen cross-linking (CXL) on corneal hydration and stiffness.

Methods: Forty-two corneal buttons from freshly enucleated porcine eyes were immersed in riboflavin 0.1% in dextran 20% dilution for 3 h in order for their hydration to reach equilibrium.

Application of sequential extraction analysis to electrokinetic remediation of cadmium, nickel and zinc from contaminated soils.

An enhanced electrokinetic process for the removal of cadmium (Cd), nickel (Ni) and zinc (Zn) from contaminated soils was performed. The efficiency of the chelate agents nitrilotriacetic acid (NTA), diethylenetriaminepentaacetic acid (DTPA) and diaminocycloexanetetraacetic acid (DCyTA) was examined under constant potential gradient (1.23 V/cm).

Chelating agent-assisted electrokinetic removal of cadmium, lead and copper from contaminated soils.

An integrated experimental program was conducted to remove Cd, Pb and Cu from contaminated soil. The chelate agents nitrilotriacetic acid (NTA), diethylenetriamine pentaacetic acid (DTPA) and ethyleneglycol tetraacetic acid (EGTA) were used as washing solutions under different pH conditions and concentrations. Results showed that the extraction efficiency for Cd in decreasing order was NTA > EGTA > DTPA, while for Pb and Cu it was DTPA > NTA > EGTA.

Narrow angle light scatter in rabbit corneas after excimer laser surface ablation.

Corneal haze following excimer laser ablation is an adverse after-effect of photorefractive keratectomy (PRK) and is associated with the development of subepithelial opacities. The present work pertains to the measurement of light scattering in rabbit corneas following excimer laser treatment; to the microscopic analysis of the light-scattering corneal structures; and to the development of a mathematical model of light propagation through the post-laser treatment cornea. Photorefractive keratectomy (PRK-6D, 6 mm optical zone) followed by standard postoperative pharmaceutical treatment was performed on rabbit eyes.

Sorption properties of low calorific value Greek lignites: removal of lead, cadmium, zinc and copper ions from aqueous solutions.

The removal of metal ions (Pb, Cd, Zn, and Cu) from spiked aqueous solutions using four lignite samples (TH2, TH7, MT2, and MT8) of different quality, from different areas in Greece, was investigated. Cation exchange capacity, humic and fulvic acid content, and the BET specific surface area of the samples were determined, proximate and ultimate analyses were conducted and the mineralogy of their low temperature ash was studied. Equilibrium and kinetic studies were performed in batch conditions.

Kinetic determination of EDTA and citrate by the displacement of fluoride from Al(3+)F(-) complexes and use of a fluoride ion-selective electrode.

The displacement of fluoride from its aluminium complexes by the action of EDTA, citrate and other ligands is a relatively slow process which can be monitored potentiometrically with a fluoride ion-selective electrode. Some characteristics of these reactions are presented. There is evidence that [AlF](2+) reacts with the competitive ligand faster than the simple free (hydrated) Al(3+) species does.