Publications by authors named "Escoubas J"

Pacific oysters face recurring outbreaks of Pacific Oyster Mortality Syndrome (POMS), a polymicrobial multifactorial disease. Although this interaction is increasingly understood, the role of epigenetics (e.g.

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The Pacific oyster lives in microbe-rich marine coastal systems subjected to rapid environmental changes. It harbours a diversified and fluctuating microbiota that cohabits with immune cells expressing a diversified immune gene repertoire. In the early stages of oyster development, just after fertilization, the microbiota plays a key role in educating the immune system.

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  • The pollution of seawater from bacteria and chemical contaminants causes significant economic losses in aquaculture, particularly in oyster farming due to high mortality rates of oysters.
  • Advanced Oxidation Processes (AOPs), like heterogeneous photocatalysis, can effectively remove organic contaminants, protecting oysters from diseases such as Pacific oyster mortality syndrome (POMS), which is linked to viral and bacterial infections.
  • A 2-hour UV/TiO photocatalytic treatment successfully inactivated the virus causing POMS and 80% of Vibrio harveyi without harming the natural bacterial community, making it a promising disinfection method for land-based oyster farms.
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  • - Polymicrobial infections, like Pacific Oyster Mortality Syndrome (POMS), are complex and under-researched, involving interactions between the ostreid herpesvirus 1 (OsHV-1) and harmful bacteria impacting oyster populations on the French Atlantic coast.
  • - Field studies and laboratory experiments revealed that certain bacterial communities flourish in oysters infected with OsHV-1 and that these bacteria can enhance the virus's effects, leading to accelerated oyster mortality.
  • - Cooperative behaviors among bacteria, including promoting one another’s growth and sharing resources, play a significant role in the severity of POMS, suggesting that targeting these interactions may help manage the disease and protect oyster health.
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  • Disease emergence is increasing due to global changes, making it crucial to understand how host populations adapt rapidly, particularly in the context of Pacific oyster mortality syndrome (POMS).
  • The study used (epi)genome-wide association mapping to reveal that oysters exposed to POMS showed signs of genetic and epigenetic selection, particularly in genes related to immunity.
  • Results indicated that about one-third of the phenotypic variation in response to POMS could be attributed to interactions between genetic and epigenetic factors, highlighting the significant role of both in rapid adaptation to infectious diseases.
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  • The Pacific oyster Crassostrea gigas faces a deadly condition known as Pacific Oyster Mortality Syndrome (POMS), triggered by the herpesvirus OsHV-1 µVar, leading to an opportunistic bacterial infection.
  • Researchers combined metabarcoding and metatranscriptomic techniques to investigate POMS, discovering a consistent progression of disease and identifying a core group of bacteria that, along with the virus, contribute to the syndrome.
  • The identified bacteria exhibit low competition for nutrients, which might enhance their ability to colonize the oyster's tissues and maintain the POMS pathobiota despite varying environmental challenges.
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Big defensins are two-domain antimicrobial peptides (AMPs) that have highly diversified in mollusks. -BigDefs are expressed by immune cells in the oyster , and their expression is dampened during the Pacific Oyster Mortality Syndrome (POMS), which evolves toward fatal bacteremia. We evaluated whether -BigDefs contribute to the control of oyster-associated microbial communities.

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Whole-genome sequencing is widely used to better understand the transmission dynamics, the evolution and the emergence of new variants of viral pathogens. This can bring crucial information to stakeholders for disease management. Unfortunately, aquatic virus genomes are usually difficult to characterize because most of these viruses cannot be easily propagated .

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Background: The interaction of organisms with their surrounding microbial communities influences many biological processes, a notable example of which is the shaping of the immune system in early life. In the Pacific oyster, Crassostrea gigas, the role of the environmental microbial community on immune system maturation - and, importantly, protection from infectious disease - is still an open question.

Results: Here, we demonstrate that early life microbial exposure durably improves oyster survival when challenged with the pathogen causing Pacific oyster mortality syndrome (POMS), both in the exposed generation and in the subsequent one.

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  • The study investigates the genetic diversity of Ostreid herpesvirus 1 (OsHV-1), which causes Pacific oyster mortality syndrome, across major oyster-farming regions in France.
  • Using ultra-deep sequencing and advanced bioinformatics, researchers assembled 21 new OsHV-1 genomes to analyze their genetic variations and evolutionary relationships.
  • The findings indicate that the Marennes-Oléron Bay is the main source of OsHV-1 diversity, highlighting the impact of oyster transfer practices on viral dispersion and demonstrating the applicability of phylodynamic methods to DNA viruses.
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  • Virus outbreaks are often unpredictable, especially for DNA viruses with low mutation rates, but whole-genome sequencing can help track genetic changes over time.
  • This study focuses on the Ostreid herpesvirus 1 (OsHV-1), a virus that has caused significant economic and ecological damage in Europe since its new variant emerged in 2008.
  • The analysis shows enough genetic diversity and evolution in OsHV-1 over the last 30 years, with evidence of selective pressures affecting certain genomic regions and variant genotypes found within individual hosts.
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Background: The impact of the microbiota on host fitness has so far mainly been demonstrated for the bacterial microbiome. We know much less about host-associated protist and viral communities, largely due to technical issues. However, all microorganisms within a microbiome potentially interact with each other as well as with the host and the environment, therefore likely affecting the host health.

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  • Juvenile Pacific oysters face serious threats from mass mortality events known as Pacific Oyster Mortality Syndrome (POMS), primarily caused by a variant of the Ostreid herpes virus (OsHV-1 μVar).
  • Research shows that there's genetic diversity in the OsHV-1 μVar virus during different outbreaks, and this diversity affects how different oyster families respond to POMS in varying coastal environments (Atlantic vs. Mediterranean).
  • The findings highlight the need for selective breeding programs that consider this viral diversity and its impact on oyster survival, which is crucial for the sustainability of the oyster industry.
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  • The microbiome of macroorganisms, like oysters, can affect their development and health, but the role of eukaryotic microbes is still not well-studied.
  • In a study on Crassostrea gigas oysters, researchers tested different primer sets for high-throughput sequencing to analyze microeukaryotic communities, finding that excluding primers performed better at avoiding contamination from oyster DNA.
  • The study identified key protist groups associated with oysters, some of which could be potential pathogens, and highlighted the utility of new primer sets for investigating oyster health issues like the Pacific Oyster Mortality Syndrome (POMS).
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Pacific Oyster Mortality Syndrome (POMS) affects oysters worldwide and causes important economic losses. Disease dynamic was recently deciphered and revealed a multiple and progressive infection caused by the OsHV-1 μVar, triggering an immunosuppression followed by microbiota destabilization and bacteraemia by opportunistic bacterial pathogens. However, it remains unknown if microbiota might participate to protect oysters against POMS, and if microbiota characteristics might be predictive of oyster mortalities.

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  • POMS is a disease affecting oysters, leading to high mortality rates, particularly in juveniles, but some oyster genotypes show resistance due to genetic factors.
  • Resistance in oysters is linked to changes in gene expression related to stress response, DNA repair, and immune functions, indicating multiple genes are involved and that this resistance can vary between different families of oysters.
  • The study identifies key genes in specific molecular pathways that contribute to stronger antiviral responses in resistant oysters, suggesting potential targets for selective breeding to enhance resilience against POMS.
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Infectious diseases are mostly explored using reductionist approaches despite repeated evidence showing them to be strongly influenced by numerous interacting host and environmental factors. Many diseases with a complex aetiology therefore remain misunderstood. By developing a holistic approach to tackle the complexity of interactions, we decipher the complex intra-host interactions underlying Pacific oyster mortality syndrome affecting juveniles of Crassostrea gigas, the main oyster species exploited worldwide.

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Previous observations suggested that microbial communities contribute to coral health and the ecological resilience of coral reefs. However, most studies of coral microbiology focused on prokaryotes and the endosymbiotic algae . In contrast, knowledge concerning diversity of other protists is still lacking, possibly due to methodological constraints.

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Since 2008, juvenile Crassostrea gigas oysters have suffered from massive mortalities in European farming areas. This disease of complex etiology is still incompletely understood. Triggered by an elevated seawater temperature, it has been associated to infections by a herpes virus named OsHV-1 as well as pathogenic vibrios of the Splendidus clade.

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Emergence of polyphagous herbivorous insects entails significant adaptation to recognize, detoxify and digest a variety of host-plants. Despite of its biological and practical importance - since insects eat 20% of crops - no exhaustive analysis of gene repertoires required for adaptations in generalist insect herbivores has previously been performed. The noctuid moth Spodoptera frugiperda ranks as one of the world's worst agricultural pests.

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  • - Spodoptera frugiperda, a significant agricultural pest in the Americas, affects crops like corn and cotton and serves as a model organism for various biological studies, including pest behavior and plant adaptation.
  • - The study compiles a reference transcriptome (Sf_TR2012b) from RNA sequences across multiple developmental stages and tissues, assessing its quality by analyzing gene families related to development, immunity, and sensory functions.
  • - The findings confirm Sf_TR2012b as a reliable reference for gene expression research, revealing spatial and temporal gene activity and highlighting the expression of olfactory receptors in both sensory and other body tissues like fat bodies.
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  • The study focuses on the venom of the endoparasitoid wasp Hyposoter didymator and its role in host interaction, particularly with the moth Spodoptera frugiperda.
  • It was found that the wasp's venom did not significantly affect the host's immune response or growth, indicating that the venom may not be crucial for successful parasitism.
  • Proteomic analysis revealed a diverse range of proteins in the venom, but their functions appear to be overshadowed by the effects of symbiotic polydnaviruses present in the wasp's ovarian fluid.
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  • The X-tox family proteins have repetitive structures with defensin-like motifs but lack the antimicrobial function of their ancestral counterparts.
  • Comparative studies in three lepidopteran species revealed that x-tox genes are closely related to defensin genes and that common ancestry includes at least two proto-domains across species.
  • Structural analysis showed gene duplication and concerted evolution leading to multiple protein isoforms, indicating complex mechanisms behind their organization and evolution within these species.
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An antimicrobial peptide (AMP) of the cecropin family was isolated by HPLC from plasma of the insect pest, Spodoptera frugiperda. Its molecular mass is 3910.9 Da as determined by mass spectrometry.

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Cycle inhibiting factors (Cif) constitute a broad family of cyclomodulins present in bacterial pathogens of invertebrates and mammals. Cif proteins are thought to be type III effectors capable of arresting the cell cycle at G(2)/M phase transition in human cell lines. We report here the first direct functional analysis of Cif(Pl), from the entomopathogenic bacterium Photorhabdus luminescens, in its insect host.

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