Phys Chem Chem Phys
January 2024
In the broad context of Dalton's atomic hypothesis and subsequent classical quantum understanding of macroscopic materials, we show how Pauling's resonance-type conceptions, as quantified in natural resonance theory (NRT) analysis of modern wavefunctions, can be modified to unify description of interatomic interactions from the Lewis-like limit of localized e-pair covalency in molecules to the extreme delocalized limit of supramolecular "soft matter" aggregation. Such "NRT-centric" integration of NRT bond orders for hard- and soft-matter interactions is illustrated with application to a long-predicted and recently synthesized organometallic sandwich-type complex ("diberyllocene") that exhibits bond orders ranging from the soft limit ( ≈ 0.01) to the typical values ( ≈ 1.
View Article and Find Full Text PDFWe employ the tools of natural bond orbital (NBO) and natural resonance theory (NRT) analysis to demonstrate the robustness, consistency, and accuracy with which Linus Pauling's qualitative conceptions of directional hybridization and resonance delocalization are manifested in all known variants of modern computational quantum chemistry methodology.
View Article and Find Full Text PDFAccurate Pt-An bond dissociation enthalpies (BDEs) for PtAnO (An = U, Np, Pu and = 0-2) and the corresponding enthalpies for the Pt + OAnO substitution reactions have been studied for the first time using an accurate composite coupled cluster approach. Analogous O-AnO bond dissociation enthalpies are also presented. To make the study possible, new correlation consistent basis sets optimized using the all-electron third-order Douglas-Kroll-Hess (DKH3) scalar relativistic Hamiltonian are developed and reported for Pt and Au, with accompanying benchmark calculations of their atomic ionization potentials to demonstrate the effectiveness of the new basis sets.
View Article and Find Full Text PDFWe reply to specific criticisms and misrepresentations of natural resonance theory (NRT) in a recent article [Y. Wang, J. Comput.
View Article and Find Full Text PDFThermochemical and spectroscopic properties for actinyl complexes involving UO and NpO with N and CO, together with the UO-O, UO-O, and UO-NO complexes, have been studied for the first time using an accurate composite coupled cluster approach. Two general bonding motifs were investigated, end-on (η) and side-on (η) relative to the metal center of the actinyls. For end-on CO complexes, both C-coordinated (An-C) and O-coordinated (An-O) structures were examined, with the former always being lower in energy.
View Article and Find Full Text PDFJ Comput Chem
September 2019
We briefly outline some leading features of the newest version, NBO 7.0, of the natural bond orbital (NBO) wavefunction analysis program. Major extensions include: (1) a new NPEPA module implementing Karafiloglou's "polyelectron population analysis" in the NBO framework; (2) new RDM2 program infrastructure for describing electron correlation effects based on full evaluation of the second-order reduced density matrix; (3) improved convex-solver implementation of natural resonance theory (NRT), allowing a greatly expanded range of applications and associated "resonance NBO" (RNBO) visualization of chemical reactivity; (4) a variety of other improvements in well-established NBO algorithms.
View Article and Find Full Text PDFWe describe the formal algorithm and numerical applications of a novel convex quadratic programming (QP) strategy for performing the variational minimization that underlies natural resonance theory (NRT). The QP algorithm vastly improves the numerical efficiency, thoroughness, and accuracy of variational NRT description, which now allows uniform treatment of all reference structures at the high level of detail previously reserved only for leading "reference" structures, with little or no user guidance. We illustrate overall QPNRT search strategy, program I/O, and numerical results for a specific application to adenine, and we summarize more extended results for a data set of 338 species from throughout the organic, bioorganic, and inorganic domain.
View Article and Find Full Text PDFPhys Chem Chem Phys
April 2019
Gas phase actinyl cation-cation interactions (CCIs) were studied by an accurate composite coupled cluster thermochemical approach for the first time. A number of CCI dimers were constructed from the monomers UO, UO, NpO, NpO, PuO, and AmO. All CCI dimers studied were calculated to be thermodynamically unstable, with dissociation energies ranging from -60 to -90 kcal mol, but in many cases kinetic stability was indicated by calculated local minima with well depths as large as ∼15 kcal mol.
View Article and Find Full Text PDFWhat is now called "resonance theory" has a long and conflicted history. We first sketch the early roots of resonance theory, its heritage of diverse physics and chemistry conceptions, and its subsequent rise to reigning chemical bonding paradigm of the mid-20th century. We then outline the alternative "natural" pathway to localized Lewis- and resonance-structural conceptions that was initiated in the 1950s, given semi-empirical formulation in the 1970s, recast in ab initio form in the 1980s, and successfully generalized to multi-structural "natural resonance theory" (NRT) form in the 1990s.
View Article and Find Full Text PDFWe describe principal features of the newly released version, NBO 6.0, of the natural bond orbital analysis program, that provides novel "link-free" interactivity with host electronic structure systems, improved search algorithms and labeling conventions for a broader range of chemical species, and new analysis options that significantly extend the range of chemical applications. We sketch the motivation and implementation of program changes and describe newer analysis options with illustrative applications.
View Article and Find Full Text PDFAb initio computational methods were used to obtain Delta(r)H(o), Delta(r)G(o), and Delta(r)S(o) for the reactions 2 NO <=> N(2)O(2) (I), NO+NO(2) <=> N(2)O(3) (II), 2 NO(2) <=> N(2)O(4) (III), NO(2)+NO(3) <=> N(2)O(5) (IV), and 2 N(2)O <=> N(4)O(2) (V) at 298.15 K. Optimized geometries and frequencies were obtained at the CCSD(T) level for all molecules except for NO, NO(2), and NO(3), for which UCCSD(T) was used.
View Article and Find Full Text PDFWe present experimental infrared spectra and theoretical electronic structure results for the geometry, anharmonic vibrational frequencies, and accurate estimates of the magnitude and the origin of the ring-puckering barrier in C4F8. High-resolution (0.0015 cm-1) spectra of the nu12 and nu13 parallel bands of perfluorocyclobutane (c-C4F8) were recorded for the first time by expanding a 10% c-C4F8 in helium mixture in a supersonic jet.
View Article and Find Full Text PDFIntrinsic reaction coordinate (IRC) torsional potentials were calculated for N(2)O(4) and N(2)O(3) based on optimized B3LYP/aug-cc-pVDZ geometries of the respective 90 degrees -twisted saddle points. These potentials were refined by obtaining CCSD(T)aug-cc-pVXZ energies [in the complete basis set (CBS) limit] of points along the IRC. A comparison is made between these ab initio potentials and an analytical form based on a two-term cosine expansion in terms of the N-N dihedral angle.
View Article and Find Full Text PDFThe influence of resonance on the acidities of dimethyl sulfide (DMS), dimethyl sulfoxide (DMSO), and dimethyl sulfone (DMSO2) and their group 16 congeners (DMXO(n) for X = Se, Te, Po and n = 0-2) is examined using ab initio methods and the natural bond orbital (NBO) and natural resonance theory (NRT) analyses. Gas-phase acidities are evaluated using B3LYP-optimized geometries with coupled cluster energies and complete basis set extrapolation. The acidity of the DMSO(n) molecules increases with increasing coordination of the central S atom.
View Article and Find Full Text PDFThe structure and ring-puckering properties of cyclobutane and its perdeuterated isotopomer are studied using high-level ab initio methods and complete basis set extrapolations. Calculations reveal significant coupling between the ring-puckering (theta) and CH(2)-rocking (alpha) motions, with equilibrium angles (theta(eq) = 29.59 degrees and alpha(eq) = 5.
View Article and Find Full Text PDFNatural energy decomposition analysis (NEDA) is a method for partitioning molecular interaction energies into physically meaningful components, including electrical interaction, charge transfer, and core repulsions. The method is a numerically stable procedure that was originally developed for analyzing Hartree-Fock (HF) wave functions based on the localized orbital description of natural bond orbital analysis. In this work, we extend NEDA to treat charge densities from density functional theory (DFT) calculations, replacing the intermolecular exchange (EX) component of the HF analysis with an exchange-correlation (XC) component.
View Article and Find Full Text PDFIntrinsic reaction coordinate (IRC) calculations of the internal rotation (torsional) potentials for H(2)O(2) and its isotopomers HDO(2) and D(2)O(2) were carried out at the CCSD(T)/CBS//aug-cc-pVDZ level. Two extrapolation methods were used to obtain energies in the complete basis set (CBS) limit. The full IRC potential was constructed from scans from the C(2v) (cis) and C(2h) (trans) transition states to the equilibrium C(2) (gauche) structure.
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