Generating Synthetic Health Sensor Data for Privacy-Preserving Wearable Stress Detection.

Smartwatch health sensor data are increasingly utilized in smart health applications and patient monitoring, including stress detection. However, such medical data often comprise sensitive personal information and are resource-intensive to acquire for research purposes. In response to this challenge, we introduce the privacy-aware synthetization of multi-sensor smartwatch health readings related to moments of stress, employing Generative Adversarial Networks (GANs) and Differential Privacy (DP) safeguards.

The Leipzig Health Atlas-An Open Platform to Present, Archive, and Share Biomedical Data, Analyses, and Models Online.

Background: Clinical trials, epidemiological studies, clinical registries, and other prospective research projects, together with patient care services, are main sources of data in the medical research domain. They serve often as a basis for secondary research in evidence-based medicine, prediction models for disease, and its progression. This data are often neither sufficiently described nor accessible.

Corrigendum to Multi-source dataset of e-commerce products with attributes for property matching [Data in Brief 41 (2022) 107884].

[This corrects the article DOI: 10.1016/j.dib.

Multi-source dataset of e-commerce products with attributes for property matching.

Schema/ontology matching consists in finding matches between types, properties and entities in heterogeneous sources of data in order to integrate them, which has become increasingly relevant with the development of web technologies and open data initiatives. One of the involved tasks is the matching of data properties, which attempts to try to find correspondences between the attributes of the entities. This is challenging due to the at times different names of equivalent properties.

Optimization of the Mainzelliste software for fast privacy-preserving record linkage.

Background: Data analysis for biomedical research often requires a record linkage step to identify records from multiple data sources referring to the same person. Due to the lack of unique personal identifiers across these sources, record linkage relies on the similarity of personal data such as first and last names or birth dates. However, the exchange of such identifying data with a third party, as is the case in record linkage, is generally subject to strict privacy requirements.

Smart Medical Information Technology for Healthcare (SMITH).

Introduction: This article is part of the Focus Theme of Methods of Information in Medicine on the German Medical Informatics Initiative. "Smart Medical Information Technology for Healthcare (SMITH)" is one of four consortia funded by the German Medical Informatics Initiative (MI-I) to create an alliance of universities, university hospitals, research institutions and IT companies. SMITH's goals are to establish Data Integration Centers (DICs) at each SMITH partner hospital and to implement use cases which demonstrate the usefulness of the approach.

Evolution of biomedical ontologies and mappings: Overview of recent approaches.

Biomedical ontologies are heavily used to annotate data, and different ontologies are often interlinked by ontology mappings. These ontology-based mappings and annotations are used in many applications and analysis tasks. Since biomedical ontologies are continuously updated dependent artifacts can become outdated and need to undergo evolution as well.

A multi-part matching strategy for mapping LOINC with laboratory terminologies.

Objective: To address the problem of mapping local laboratory terminologies to Logical Observation Identifiers Names and Codes (LOINC). To study different ontology matching algorithms and investigate how the probability of term combinations in LOINC helps to increase match quality and reduce manual effort.

Materials And Methods: We proposed two matching strategies: full name and multi-part.

Impact of ontology evolution on functional analyses.

Motivation: Ontologies are used in the annotation and analysis of biological data. As knowledge accumulates, ontologies and annotation undergo constant modifications to reflect this new knowledge. These modifications may influence the results of statistical applications such as functional enrichment analyses that describe experimental data in terms of ontological groupings.

COnto-Diff: generation of complex evolution mappings for life science ontologies.

Life science ontologies evolve frequently to meet new requirements or to better reflect the current domain knowledge. The development and adaptation of large and complex ontologies is typically performed collaboratively by several curators. To effectively manage the evolution of ontologies it is essential to identify the difference (Diff) between ontology versions.

CODEX: exploration of semantic changes between ontology versions.

Life science ontologies substantially change over time to meet the requirements of their users and to include the newest domain knowledge. Thus, an important task is to know what has been modified between two versions of an ontology (diff). This diff should contain all performed changes as compact and understandable as possible.

GOMMA: a component-based infrastructure for managing and analyzing life science ontologies and their evolution.

Background: Ontologies are increasingly used to structure and semantically describe entities of domains, such as genes and proteins in life sciences. Their increasing size and the high frequency of updates resulting in a large set of ontology versions necessitates efficient management and analysis of this data.

Results: We present GOMMA, a generic infrastructure for managing and analyzing life science ontologies and their evolution.

OnEX: Exploring changes in life science ontologies.

Background: Numerous ontologies have recently been developed in life sciences to support a consistent annotation of biological objects, such as genes or proteins. These ontologies underlie continuous changes which can impact existing annotations. Therefore, it is valuable for users of ontologies to study the stability of ontologies and to see how many and what kind of ontology changes occurred.

FUNC: a package for detecting significant associations between gene sets and ontological annotations.

Background: Genome-wide expression, sequence and association studies typically yield large sets of gene candidates, which must then be further analysed and interpreted. Information about these genes is increasingly being captured and organized in ontologies, such as the Gene Ontology. Relationships between the gene sets identified by experimental methods and biological knowledge can be made explicit and used in the interpretation of results.

Adaptive guideline-based treatment workflows with AdaptFlow.

One goal in modern medicine is to increase the treatment quality. A major step towards this aim is to support the execution of standardized, guideline-based clinical protocols, which are used in many medical domains, e.g.