Publications by authors named "Erandika Karunaratne"

Article Synopsis
  • LOGKPREDICT combines HostDesigner molecular design software with the machine learning program Chemprop to improve the molecular design process by ranking ligands based on their metal-ligand binding strength using predicted log K values.
  • The program utilizes robust data from the NIST and IUPAC databases to train machine learning algorithms, achieving impressive performance metrics like low root mean square error (RMSE) and high R² values across various models.
  • LOGKPREDICT is effective in identifying ligands with high selectivity for lanthanides and can predict new ligands that are yet to be experimentally verified, facilitating the design of ligands for specific applications in aqueous solutions.
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The inability to identify the structures of most metabolites detected in environmental or biological samples limits the utility of nontargeted metabolomics. The most widely used analytical approaches combine mass spectrometry and machine learning methods to rank candidate structures contained in large chemical databases. Given the large chemical space typically searched, the use of additional orthogonal data may improve the identification rates and reliability.

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The high-throughput identification of unknown metabolites in biological samples remains challenging. Most current non-targeted metabolomics studies rely on mass spectrometry, followed by computational methods that rank thousands of candidate structures based on how closely their predicted mass spectra match the experimental mass spectrum of an unknown. We reasoned that the infrared (IR) spectra could be used in an analogous manner and could add orthologous structure discrimination; however, this has never been evaluated on large data sets.

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One of the greatest challenges with single-walled carbon nanotube (SWNT) photovoltaics and nanostructured devices is maintaining the nanotubes in their pristine state (i.e., devoid of aggregation and inhomogeneous doping) so that their unique spectroscopic and transport characteristics are preserved.

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