Publications by authors named "English A"

Neuromodulatory signaling is poised to serve as a neural mechanism for gain control, acting as a crucial tuning factor to influence neuronal activity by dynamically shaping excitatory and inhibitory fast neurotransmission. The endocannabinoid (eCB) signaling system, the most widely expressed neuromodulatory system in the mammalian brain, is known to filter excitatory and inhibitory inputs through retrograde, pre-synaptic action. However, whether eCBs exert retrograde gain control to ultimately facilitate reward-seeking behaviors in freely moving mammals is not established.

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Nitroglycerin is a potent vasodilator in clinical use since the late 1800s. It functions as a prodrug that is bioactivated by formation of an enzyme-based thionitrate, E-Cys-NO. This intermediate reportedly decomposes to release NO and NO but their relative yields remain controversial.

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Background: Given the continued increases in rates of both Chlamydia trachomatis (CT) and Neisseria gonorrhoeae (NG) infection, additional diagnostic assays may be useful in increasing access to testing for these sexually transmitted infections. We evaluated the performance of the NeuMoDx™ CT/NG Assay 2.0 on the NeuMoDx-96 and NeuMoDx-288 Molecular Systems.

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Motor axon regeneration after traumatic nerve injuries is a slow process that adversely influences patient outcomes because muscle reinnervation delays result in irreversible muscle atrophy and suboptimal axon regeneration. This advocates for investigating methods to accelerate motor axon growth. Electrical nerve stimulation and exercise both enhance motor axon regeneration in rodents and patients, but these interventions cannot always be easily implemented.

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Article Synopsis
  • A 3-month-old Cane Corso puppy suffered from severe symptoms, including hindlimb lameness and eventual paralysis, leading to its critical condition at the Purdue Veterinary Hospital.
  • Blood tests revealed significant abnormalities, including high levels of creatine kinase, and the puppy tragically went into cardiac arrest shortly after diagnostics.
  • Necropsy findings showed widespread muscle degeneration and inflammation, along with protozoal cysts confirmed by elevated antibody levels, highlighting disseminated neosporosis as a rare but critical cause of ascending paresis in young dogs.
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Aim: Type-2 Diabetes Mellitus (T2DM) affects millions globally, with escalating rates. It often leads to undiagnosed complications and commonly coexists with other health conditions. This study investigates two types of prevalent comorbidities related to T2DM-the circulatory system (DCM1) and digestive system diseases (DCM2)-using clinical, genomic and proteomic datasets.

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Accurately genotyping structural variant (SV) alleles is crucial to genomics research. We present a novel method (kanpig) for genotyping SVs that leverages variant graphs and k-mer vectors to rapidly generate accurate SV genotypes. We benchmark kanpig against the latest SV benchmarks and show single-sample genotyping concordance of 82.

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Research and medical genomics require comprehensive, scalable methods for the discovery of novel disease targets, evolutionary drivers and genetic markers with clinical significance. This necessitates a framework to identify all types of variants independent of their size or location. Here we present DRAGEN, which uses multigenome mapping with pangenome references, hardware acceleration and machine learning-based variant detection to provide insights into individual genomes, with ~30 min of computation time from raw reads to variant detection.

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  • The study explored how personal relative deprivation (PRD)—the feeling of being worse off compared to similar others—affects people's explanations for outcomes in their lives, focusing on the concept of locus of control (the extent to which individuals believe they can control events).
  • Across eight studies involving 6,729 participants, results showed that those with higher PRD tended to attribute outcomes to external factors (like luck or circumstance) rather than internal factors (such as their own abilities), regardless of their socioeconomic status.
  • The findings suggest that PRD not only consistently correlates with external locus of control across different cultures but also influences how individuals interpret events in their lives, indicating a significant psychological effect
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In cultures with high relational mobility, relationships are free and flexible. People can make new friends easily, and they have the freedom to leave unsatisfying relationships. In cultures with low relational mobility, relationships are more fixed, and people have less freedom to leave relationships.

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  • Cellular senescence refers to the permanent halt of cell growth caused by factors like genetic mutations or damage, and it's linked to aging and diseases like diabetes and heart issues.
  • The study aimed to identify specific senescence biomarkers in patients with acute kidney injury (AKI) and chronic kidney disease (CKD) using OLINK proteomics.
  • The proteins CKAP4 and PTX3 were found to be significantly elevated in AKI and CKD patients, suggesting they could serve as important indicators for kidney disease progression.
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  • The COVID-19 pandemic has challenged global healthcare systems, prompting research into genetic and proteomic markers for better patient prognosis.
  • A study analyzed the protein and genetic profiles of 400 hospitalized and 483 non-hospitalized COVID-19 patients, uncovering 224 proteins linked to inflammation and immunity.
  • Key proteins like LGALS9 and LAMP3 were identified as significant predictors of severe illness, suggesting these markers could serve as important tools for understanding and treating COVID-19 outcomes.
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Preserving the health of the mitochondrial network is critical to cell viability and longevity. To do so, mitochondria employ several membrane remodeling mechanisms, including the formation of mitochondrial-derived vesicles (MDVs) and compartments (MDCs) to selectively remove portions of the organelle. In contrast to well-characterized MDVs, the distinguishing features of MDC formation and composition remain unclear.

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Background: Falsified medicines and their international regulation impacts all healthcare sectors and their actors. These regulations aim to strengthen and protect the global pharmaceutical supply chain against falsified medicines. However, an evaluation of the impacts of these regulations on key stakeholders within the legitimate supply chain have not been explored.

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Introduction: In 2021, the International Diabetes Federation reported that 537 million people worldwide are living with diabetes. While glucagon-like peptide-1 agonists provide significant benefits in diabetes management, approximately 40% of patients do not respond well to this therapy. This study aims to enhance treatment outcomes by using machine learning to predict individual response status to glucagon-like peptide-1 therapy.

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Depletion or inhibition of core stress granule proteins, G3BP1 in mammals and TIAR-2 in , increases axon regeneration in injured neurons that show spontaneous regeneration. Inhibition of G3BP1 by expression of its acidic or 'B-domain' accelerates axon regeneration after nerve injury bringing a potential therapeutic intervention to promote neural repair in the peripheral nervous system. Here, we asked if G3BP1 inhibition is a viable strategy to promote regeneration in the injured mammalian central nervous system where axons do not regenerate spontaneously.

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Tandem repeats (TRs) are highly polymorphic in the human genome, have thousands of associated molecular traits and are linked to over 60 disease phenotypes. However, they are often excluded from at-scale studies because of challenges with variant calling and representation, as well as a lack of a genome-wide standard. Here, to promote the development of TR methods, we created a catalog of TR regions and explored TR properties across 86 haplotype-resolved long-read human assemblies.

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Background: Engaging patients and community members in healthcare implementation, research and evaluation has become more popular over the past two decades. Despite the growing interest in patient engagement, there is scant evidence of its impact and importance. Boot Camp Translation (BCT) is one evidence-based method of engaging communities in research.

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Background And Purpose: Neurotransmission and neuroinflammation are controlled by local increases in both extracellular ATP and the endocannabinoid 2-arachidonoyl glycerol (2-AG). While it is known that extracellular ATP stimulates 2-AG production in cells in culture, the dynamics and molecular mechanisms that underlie this response remain poorly understood. Detection of real-time changes in eCB levels with the genetically encoded sensor, GRAB, can address this shortfall.

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Cells utilize multiple mechanisms to maintain mitochondrial homeostasis. We recently characterized a pathway that remodels mitochondria in response to metabolic alterations and protein overload stress. This remodeling occurs via the formation of large membranous structures from the mitochondrial outer membrane called mitochondrial-derived compartments (MDCs), which are eventually released from mitochondria and degraded.

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Dietary intakes of omega-3 long chain polyunsaturated fatty acids (O3LC-PUFAs) such as eicosapentaenoic and docosahexaenoic acid are central to development and health across the life course. O3LC-PUFAs have been linked to neurological development, maternal and child health and the etiology of certain non-communicable diseases including age-related cognitive decline, cardiovascular disease, and diabetes. However, dietary inadequacies exist in the United Kingdom and on a wider global scale.

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Background: In 2016, the UK had 4.5 million people with diabetes, predominantly Type-2 Diabetes Mellitus (T2DM). The NHS allocates £10 billion (9% of its budget) to manage diabetes.

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Article Synopsis
  • Health organizations are struggling to control the spread of COVID-19, especially regarding high-risk individuals who may need hospitalization, making it crucial to identify key biomarkers related to severe illness.
  • The COVID-19 Response Study intends to conduct a multiomics analysis using blood and saliva samples from 1,000 recovered individuals to uncover host susceptibility factors related to SARS-CoV-2 and severe COVID-19 outcomes.
  • The study includes a cohort of 519 participants in Northern Ireland with confirmed SARS-CoV-2 infections, as well as a follow-up group to track symptoms and immune responses over the year post-infection, incorporating extensive data collection and analysis methods.
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Background: With the spread of SARS-CoV-2 impacting upon public health directly and socioeconomically, further information was required to inform policy decisions designed to limit virus spread during the pandemic. This study sought to contribute to serosurveillance work within Northern Ireland to track SARS-CoV-2 progression and guide health strategy.

Methods: Sera/plasma samples from clinical biochemistry laboratories were analysed for anti-SARS-CoV-2 antibodies.

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