Publications by authors named "Emmanuelle Pales Espinosa"

Suspension-feeding bivalves, including the oyster Crassostrea virginica, use mucosal lectins to capture food particles. For instance, oysters can increase the transcription of these molecules to enhance food uptake. However, the regulatory processes influencing food uptake remain unclear although likely involve neuropeptides.

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  • The bay scallop (Argopecten irradians) is important commercially, culturally, and ecologically, primarily found on the eastern U.S. coast but also farmed in China.
  • Researchers assembled a detailed chromosome-level reference genome for the bay scallop, with a total size of 845.9 Mb across 1,503 scaffolds and confirmed 16 chromosomes.
  • The genome includes a significant amount of repetitive elements (36.2%), is highly complete (96.2% according to BUSCO analysis), and contains 33,772 protein-coding genes, providing a resource for future evolutionary and conservation studies.
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  • - The hard clam, essential to the U.S. shellfish industry, faced declining populations due to overharvesting, but the shift to aquaculture has led to increased production and new challenges like disease outbreaks.
  • - Researchers developed a 66K SNP array after analyzing a large number of clam samples, which helps in genetic studies, breeding programs, and understanding disease resistance and adaptability to the environment.
  • - The array showed a high performance pass rate and reliability in detecting genetic diversity and relationships among clam populations, including markers for disease management, proving its effectiveness for further research and aquaculture practices.
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Ocean acidification (OA) is recognized as a major stressor for a broad range of marine organisms, particularly shell-building invertebrates. OA can cause alterations in various physiological processes such as growth and metabolism, although its effect on host-pathogen interactions remains largely unexplored. In this study, we used transcriptomics, proteomics, and physiological assays to evaluate changes in immunity of the eastern oyster Crassostrea virginica exposed to OA conditions (pH = 7.

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  • Ocean acidification (OA) poses a significant threat to marine life, particularly the eastern oyster (C. virginica), and this study investigates how these oysters can withstand OA through molecular mechanisms.
  • Researchers conducted experiments with oyster larvae, comparing the gene expression and genetic variation of individuals raised in normal vs. acidified conditions, revealing significant changes, especially in genes tied to shell formation and immune function.
  • The findings indicate that while short-term acclimation to OA is possible, it may come with sustainability concerns, highlighting the necessity of selecting resilient genetic variants for future oyster conservation and aquaculture efforts.
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Low pH conditions, associated with ocean acidification, represent threats to many commercially and ecologically important organisms, including bivalves. However, there are knowledge gaps regarding factors explaining observed differences in biological responses to low pH in laboratory experiments. Specific sources of local adaptation such as upwelling exposure and the role of experimental design, such as carbonate chemistry parameter changes, should be considered.

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The negative impacts of ocean warming and acidification on bivalve fisheries are well documented but few studies investigate parameters relevant to energy budgets and larval dispersal. This study used laboratory experiments to assess developmental, physiological and behavioral responses to projected climate change scenarios using larval Atlantic surfclams Spisula solidissima solidissima, found in northwest Atlantic Ocean continental shelf waters. Ocean warming increased feeding, scope for growth, and biomineralization, but decreased swimming speed and pelagic larval duration.

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The bay scallop, Argopecten irradians, represents a commercially, culturally and ecologically important species found along the United States' Atlantic and Gulf coasts. Since 2019, scallop populations in New York have been suffering large-scale summer mortalities resulting in 90-99% reduction in biomass of adult scallops. Preliminary investigations of these mortality events showed 100% prevalence of an apicomplexan parasite infecting kidney tissues.

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Oceanic absorption of atmospheric CO results in alterations of carbonate chemistry, a process coined ocean acidification (OA). The economically and ecologically important eastern oyster () is vulnerable to these changes because low pH hampers CaCO precipitation needed for shell formation. Organisms have a range of physiological mechanisms to cope with altered carbonate chemistry; however, these processes can be energetically expensive and necessitate energy reallocation.

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Calcifying marine organisms, including the eastern oyster (), are vulnerable to ocean acidification (OA) because it is more difficult to precipitate calcium carbonate (CaCO). Previous investigations of the molecular mechanisms associated with resilience to OA in demonstrated significant differences in single nucleotide polymorphism and gene expression profiles among oysters reared under ambient and OA conditions. Converged evidence generated by both of these approaches highlighted the role of genes related to biomineralization, including perlucins.

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  • Ocean acidification (OA) is expected to significantly reduce seawater pH and carbonate saturation by the end of the century, threatening marine organisms like the northern quahog clam.
  • This study investigated how clams adapt to OA by examining their hemolymph and extrapallial fluid (EPF) under acidified conditions compared to normal ones for one year.
  • Results showed clams can increase the pH and calcium levels in their bodily fluids and upregulate genes related to biomineralization and acid-base balance, indicating their capability to cope with OA effects.
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  • The European flat oyster's population has drastically declined due to two parasites, leading to stock collapse and loss of natural beds.
  • Research has focused on understanding immune responses to these parasites and developing genetic programs to enhance parasite resistance.
  • A newly completed chromosome-level genome assembly provides insights into the oyster's genetic makeup and is crucial for ongoing studies in breeding, aquaculture, and restoration of natural habitats.
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  • The increase in CO2 levels is leading to ocean acidification, which threatens coastal marine ecosystems and important species like the northern quahog clam.
  • Research on the physiological effects of ocean acidification on this clam has shown negative impacts on growth and survival, but the molecular mechanisms behind their resilience remain unclear.
  • A study involving fertilized clam gametes revealed significant changes in gene expression and allele frequencies in clams reared under acidified conditions, focusing on genes related to shell formation, immune response, and metabolism that may help them cope with acidification.
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Ocean acidification (OA) is a major threat to marine calcifiers, and little is known regarding acclimation to OA in bivalves. This study combined physiological assays with next-generation sequencing to assess the potential for recovery from and acclimation to OA in the eastern oyster () and identify molecular mechanisms associated with resilience. In a reciprocal transplant experiment, larvae transplanted from elevated CO (~1400 ppm) to ambient CO (~350 ppm) demonstrated significantly lower mortality and larger size post-transplant than oysters remaining under elevated CO and had similar mortality compared to those remaining in ambient conditions.

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  • Hemocytes in bivalves, found in both hemolymph and extrapallial fluid (EPF), are crucial for innate immunity and shell biomineralization.
  • The study revealed that genes related to shell formation, including those involved in chitin metabolism and ion transport, are overexpressed in the EPF, highlighting its role in biomineralization.
  • Functional assays indicated that hemocytes in EPF have higher calcium levels than those in hemolymph, suggesting they contribute significantly to the process of shell formation while also maintaining immune functions.
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  • The hard clam Mercenaria mercenaria is an important marine species along the Atlantic coast, facing threats from diseases and environmental stress, making genome characterization essential for research and aquaculture.
  • A detailed genome assembly of 1.86 Gb revealed 19 chromosomes and 34,728 predicted protein-coding genes, showing significant similarities and variations compared to other clam species, particularly in immune-related proteins.
  • This study highlights the hard clam's diverse immune response, which may enhance its ability to deal with infections and environmental changes.
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In the oyster , the organization of the gill allows bidirectional particle transport where a dorsal gill tract directs particles meant to be ingested while a ventral tract collects particles intended to be rejected as pseudofeces. Previous studies showed that the transport of particles in both tracts is mediated by mucus. Consequently, we hypothesized that the nature and/or the quantity of mucosal proteins present in each tract is likely to be different.

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  • * It summarizes current knowledge about mucus structures and showcases ongoing research efforts worldwide, focusing on the properties and functions of mucus and its hierarchical organization.
  • * The authors call for a more organized approach to mucus research, aiming to create a comprehensive knowledge base for comparative studies (referred to as "mucomics") to ultimately inspire the design of new materials based on animal mucus features.
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  • Hard clam populations in the northeastern U.S. have been declining due to a parasite called QPX, which affects both wild and aquacultured stocks.
  • This study identifies specific genetic variants (SNPs) linked to clam survivorship, analyzing samples from two distinct populations before and after QPX-related deaths using a draft genome assembly.
  • Approximately 200 genes showed significant variations, with 18 genes common to both populations, pointing towards pathways that may help in breeding clams resistant to QPX through marker-assisted selection.
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Suspension-feeding bivalves are known to discriminate among a complex mixture of particles present in their environments. The exact mechanism that allows bivalves to ingest some particles and reject others as pseudofeces has yet to be fully elucidated. Recent studies have shown that interactions between lectins found in the mucus covering oyster and mussel feeding organs and carbohydrates found on the microalga cell surface play a central role in this selection process.

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Ocean acidification alters seawater carbonate chemistry, which can have detrimental impacts for calcifying organisms such as bivalves. This study investigated the physiological cost of resilience to acidification in Mercenaria mercenaria, with a focus on overall immune performance following exposure to Vibrio spp. Larval and juvenile clams reared in seawater with high pCO (~1200 ppm) displayed an enhanced susceptibility to bacterial pathogens.

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  • - Bivalves, like oysters and clams, are now widely available due to advancements in aquaculture and seafood transport, shifting from exclusive coastal delicacies to global options.
  • - Recent high-throughput research on Mollusca has provided valuable data that could enhance bivalve production and management, while also paving the way for insights into human health.
  • - Bivalves exhibit unique biological features, such as shell formation and immune responses, which are being explored for their potential applications in drug development, toxicology, and cancer research.
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The alveolate Perkinsus marinus is the most devastating parasite of the eastern oyster Crassostrea virginica. The parasite is readily phagocytosed by oyster hemocytes, but instead of intracellular killing and digestion, P. marinus can survive phagocytosis and divide in host cells.

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Atlantic surfclam populations have significantly declined in state and federal waters from the south shore of Long Island, New York to the Delmarva Peninsula since the early 2000s. Previous studies have demonstrated that surfclams in this geographic range show signs of physiological stress, suggested to be a result of increasing ocean temperatures. In this study, we examined the effect of 2 temperature regimes (19 °C and 23 °C) on surfclam physiology.

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Hemocytes associated with the mucus lining of pallial (mantle, gill) surfaces of the oyster Crassostrea virginica have been recently suggested to facilitate infection by the Alveolate parasite Perkinsus marinus by mediating the uptake and dispersion of parasite cells. These "pallial hemocytes", which are directly exposed to microbes present in surrounding seawater, are able to migrate bi-directionally between mucosal surfaces and the circulatory system, potentially playing a sentinel role. Interestingly, P.

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